View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_16 (Length: 335)
Name: NF20944_low_16
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 12446611 - 12446868
Alignment:
| Q |
1 |
aaagtaaatgcctagttttcttaactttgacggtaatgaatgaaattaagttatgcgggcaaaaccttttttagaatgtcaatgagtcaatgttatgtat |
100 |
Q |
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| T |
12446611 |
aaagtaaatgcctagtttttttaactttgacggtaatgaatgaaattaagttatgcgggcaaaacctttattagaatatcaatgagtcaatgttgtgtat |
12446710 |
T |
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| Q |
101 |
tttgatatagatgagctataagttgttggattggaccagtacctaaatgaatttgcaataaatgtatatgaaattataggcagtgtgatatctagaatcc |
200 |
Q |
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| T |
12446711 |
tttgatatagatgagctataaggtgttggattggaccagtacctaaatgaatttgcaataaatgtatatgaaattataggcagtgtgatatctataatcc |
12446810 |
T |
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| Q |
201 |
gggtccatgtatttgcacatgct-cgccatttggggtgacaactataattaagatata |
257 |
Q |
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| T |
12446811 |
gggtccatgtatttgcacatgctcccccatttggggtgacaactataattaagatata |
12446868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 12448348 - 12448414
Alignment:
| Q |
253 |
atatatatgtatgtatgtattgaaagatagagatataaaggagttgataatgtggagtttgtgtttgt |
320 |
Q |
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| T |
12448348 |
atatatatatatatatatattgaaagaaagggatatataggagttg-taatgtggagtttgtgtttgt |
12448414 |
T |
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