View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_18 (Length: 318)
Name: NF20944_low_18
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 4347222 - 4346936
Alignment:
| Q |
15 |
tatacatgggagaattgaatacgagactttgaaaaagaacacacttcatagacccaaaccaactaactcgacttcaaaaacctatttagtattatacata |
114 |
Q |
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| T |
4347222 |
tatacatgggagaattgaatacgagactttggaaaagaacacacttcatagacccaaaccaactaactcgacttcaaaagcctatttagtattatacata |
4347123 |
T |
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| Q |
115 |
ggaatggnnnnnnnnnccaaaatgttgaactgaactgctcaaccgatattgaaaccaaccagatttcagtatcagttattaaacgaacggtttaataaaa |
214 |
Q |
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| T |
4347122 |
ggaatggacaaaaaaaccaaaatgttgaactgaactgctcaaccgatattgaaaccaaccagatttcagtatcagttattaaacgaacggtttaataaaa |
4347023 |
T |
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| Q |
215 |
agaaaaacagaactgaacttgaaccattacgaaccattattttaggcttctaaaccatcacgaaccaaattttttacataaatatag |
301 |
Q |
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| T |
4347022 |
agaaaaacagaactgaacttgaaccattacgaaccattattttaggcttctaaaccatcacgaaccaaattttttacataaatatag |
4346936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 4332282 - 4331996
Alignment:
| Q |
15 |
tatacatgggagaattgaatacgagactttgaaaaagaacacacttcatagacccaaaccaactaactcgacttcaaaaacctatttagtattatacata |
114 |
Q |
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|||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4332282 |
tatacaggggagaattgaatatgagacttaggaaaagaacacacttcatagacccaaaccaactaactcgacttcaaaagcctatttagtattatacata |
4332183 |
T |
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| Q |
115 |
ggaatggnnnnnnnnnccaaaatgttgaactgaactgctcaaccgatattgaaaccaaccagatttcagtatcagttattaaacgaacggtttaataaaa |
214 |
Q |
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| T |
4332182 |
ggaatggacaaaaaaaccaaaatgttgaactgagctgctgaaccgatattgaaaccaacgagatttcagtatcagttattaaccgaacggtttaataaaa |
4332083 |
T |
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| Q |
215 |
agaaaaacagaactgaacttgaaccattacgaaccattattttaggcttctaaaccatcacgaaccaaattttttacataaatatag |
301 |
Q |
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| T |
4332082 |
agaaaaacagaactgaacttgaaccattacgaaccattatttaaggcttctgaaccatcacgaaccaaattttttacataaatatag |
4331996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 4336528 - 4336247
Alignment:
| Q |
22 |
gggagaattgaatacgagactttgaaaaagaacacacttcataga--cccaaaccaactaactcgacttcaaaaacctatttagtattatacataggaat |
119 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
4336528 |
gggagaattgaatatgagactttggaaaagaacacacttcatagagacccaaaccaactaactcaacttcaaaagcctatttagtattatacataggaat |
4336429 |
T |
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| Q |
120 |
ggnnnnnnnnnccaaaatgttgaactgaactgctcaaccgatattgaaaccaaccagatttcagtatcagttattaaacgaacggtttaataaaaagaaa |
219 |
Q |
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| T |
4336428 |
ggacaaaaaaaccaaaatgttgaactgaactgctaaaccgatattgaaaccaacgagatttcagtatccgttattaaccgaacggtttaataaaaagaaa |
4336329 |
T |
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| Q |
220 |
aacagaactgaacttgaaccattacgaaccattattttaggcttctaaaccatcacgaaccaaattttttacataaatatag |
301 |
Q |
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| T |
4336328 |
aacagaactgaacttgaaccattacgaaccattatttaaggcttcagaaccatcacgaaccaaattttttacataaatatag |
4336247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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