View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_20 (Length: 298)
Name: NF20944_low_20
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_20 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 85 - 286
Target Start/End: Original strand, 19782213 - 19782414
Alignment:
| Q |
85 |
aagagtgcactctggaatatttaatagcattgttttattagtttataatctattcaactcaacctttaattttgtaaaatctgacatatttggcctgttt |
184 |
Q |
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| T |
19782213 |
aagagtgcagtctggcatatttaatagcattgttttattagtttataatctattcaactcaacctttaattttgtaaaatctgaaatatttggcctgttt |
19782312 |
T |
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| Q |
185 |
tcaattaaaaaagttccggtacttgataagcatcaaattttgaaaagggtcctttatcattcactcttatattctgtaacaggacaagaatgccttaact |
284 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19782313 |
tcaattaaaaaagttccagtacttgataagcatcaaattttgaaaagggtcctttatcattcactcttatattctgtaacaggacaagaatgccttagct |
19782412 |
T |
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| Q |
285 |
at |
286 |
Q |
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|| |
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| T |
19782413 |
at |
19782414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 19349959 - 19349854
Alignment:
| Q |
182 |
ttttcaattaaaaaag-ttccggtacttgataagcatcaaattttgaaaagggtcctttatcattcactcttatattctgtaacaggacaagaatgcctt |
280 |
Q |
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| T |
19349959 |
ttttcaattaaaaaatattccaatacttgataagcatcaaatttatgaaaggggcttttatcattcactcatatgttctgtaacaggaagagaatgcctt |
19349860 |
T |
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| Q |
281 |
aactat |
286 |
Q |
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| |||| |
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| T |
19349859 |
agctat |
19349854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 32576200 - 32576125
Alignment:
| Q |
112 |
cattgttttattagtttataatctattcaactcaacctttaattttgtaaaatctgacatatttggcctgttttca |
187 |
Q |
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| T |
32576200 |
cattgttttattagtttataatctattgaactcagcctttaattttgtaaaatctgaaatatttggcctgttttca |
32576125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 12732843 - 12732778
Alignment:
| Q |
116 |
gttttattagtttataatctattcaactcaacctttaattttgtaaaatctgacatatttggcctg |
181 |
Q |
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| T |
12732843 |
gtttcattagtttacaatctattcaacttagcctttaatgtcctaaaatctgaaatatttcgcctg |
12732778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 32576111 - 32576074
Alignment:
| Q |
249 |
tcttatattctgtaacaggacaagaatgccttaactat |
286 |
Q |
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| T |
32576111 |
tcttatattctgtaacatgacaaaaatgccttaactat |
32576074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 3924 - 3984
Alignment:
| Q |
121 |
attagtttataatctattcaactcaacctttaattttgtaaaatctgacatatttggcctg |
181 |
Q |
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||||||||| ||||||||||||| | |||||||| | |||||||||| |||||| ||||| |
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| T |
3924 |
attagtttacaatctattcaacttagcctttaatgtcctaaaatctgaaatatttcgcctg |
3984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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