View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_22 (Length: 294)
Name: NF20944_low_22
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 54010062 - 54010345
Alignment:
| Q |
1 |
tgtttataaatttttgcttatattgtgggacagaaagagtaatatagtaaagaaacttgaataataaatacaaccacacatgatggccaatcccaacaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010062 |
tgtttataaatttttgcttatattgtgggacagaaagagtaatatagtaaagaaacttgaataataaatacaaccacacatgatggccaatcccaacaga |
54010161 |
T |
|
| Q |
101 |
acatgcaatagtataccaaaacatataattaagacacaactttagaaagttgcttgtttatgacaaatatttttaatctgtttttgtgtgtggacttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010162 |
acatgcaatagtataccaaaacatataattaagacacaactttagaaagttgcttgtttatgacaaatatttttaatctgtttttgtgtgtggacttgat |
54010261 |
T |
|
| Q |
201 |
gaaactggccttaagccatgtttgagtgctgcttcccacacaagatcaatcctgttaacatctaaggcaccaacttcatgatga |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010262 |
gaaactggccttaagccatgtttgagtgctgcttcccacacaagatcaatcctgttaacatctaaggcaccaacttcatgatga |
54010345 |
T |
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