View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_23 (Length: 292)
Name: NF20944_low_23
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 40120037 - 40120294
Alignment:
| Q |
13 |
aatataatgagaataaaatagtcaagttcattactagttgtttttaatttttactttatatatgctacttgttaattgatttcttggtgtatataatcta |
112 |
Q |
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| T |
40120037 |
aatataatgagaataaaatagtcaagttcattactagttgtttttaatttttactttatatatgctacttgttaattgatttcttggtgtatataatcta |
40120136 |
T |
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| Q |
113 |
taattgaatgatgtttgaagctttccctagatgtcttacttcatctaatctatattcagtcataaatgttgaatgatgtgcgagtgtggtcaataagatt |
212 |
Q |
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| T |
40120137 |
taattgaatgatgtttgaagctttccctagatgtcttacttcatc-------tattcagtcataaatgttgaatgatgtgcgagtgtggtcaataagatt |
40120229 |
T |
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| Q |
213 |
tatataatctcacggtactccctatttgatgagactcattcttgaataagatttaaatagaaatt |
277 |
Q |
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| T |
40120230 |
tatataatctcagggtactccctatttgatgagactcattcttgaataagatttaaatagaaatt |
40120294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 40124725 - 40124840
Alignment:
| Q |
19 |
atgagaataaaatagtcaagttcattactagttgtttttaatttttactttatatatgctacttgt--taattgatttcttgg-tgtatataatctataa |
115 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||| |||| | | |||||| || ||||||||||||||| ||||||||| ||| || |
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| T |
40124725 |
atgagaataaaatagtcaagttcattact--ttgttcttaatttctactctct----gctactggtaataattgatttcttgggtgtatataagctacaa |
40124818 |
T |
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| Q |
116 |
ttgaatgatgtttgaagctttc |
137 |
Q |
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|||||||||||||| ||||||| |
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| T |
40124819 |
ttgaatgatgtttgtagctttc |
40124840 |
T |
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