View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_25 (Length: 283)
Name: NF20944_low_25
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 9537978 - 9538185
Alignment:
| Q |
60 |
atataaggaaagaaatatgcacgttgcttggtagtggatgcaaatgagttgcagaaacaaaatctctaattaattctattatacccacaataaaaggaaa |
159 |
Q |
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| T |
9537978 |
atatcaggaaagaaatatgcacgttgattggtagtggatgcaaatgaattgcagaaacaaaatctctaattaattctattatacccacaataaaaggaaa |
9538077 |
T |
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| Q |
160 |
tggggctgttatctatttcctaactcaatcaaggccactaaccgagtaattgggagaaagttgcaaagtctatggcttgacaattaggccactaaaagaa |
259 |
Q |
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| T |
9538078 |
tggggctcttatctatttcctaacgcaatcaaggccactaaccgagtaattgggagatagttgcaaagtctatggcttgacaattaggccactaaaagaa |
9538177 |
T |
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| Q |
260 |
cgtggatg |
267 |
Q |
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|||||||| |
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| T |
9538178 |
cgtggatg |
9538185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 102 - 267
Target Start/End: Complemental strand, 49497375 - 49497210
Alignment:
| Q |
102 |
aatgagttgcagaaacaaaatctctaattaattctattatacccacaataaaaggaaatggggctgttatctatttcctaactcaatcaaggccactaac |
201 |
Q |
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| T |
49497375 |
aatgagttgtagaaacaaaatctccaattaattctattatacccacaataaaaggaaatggggctgttatctatttcctaactcaatcaaggccactaac |
49497276 |
T |
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| Q |
202 |
cgagtaattgggagaaagttgcaaagtctatggcttgacaattaggccactaaaagaacgtggatg |
267 |
Q |
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| T |
49497275 |
cgagtaattgggggatagttgcaaagtctatggcttgacaattaggccactaaaagaacgtggatg |
49497210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 31519964 - 31520038
Alignment:
| Q |
193 |
gccactaaccgagtaattgggagaaagttgcaaagtctatggcttgacaattaggccactaaaagaacgtggatg |
267 |
Q |
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| T |
31519964 |
gccactaacccaataattaggaggtagttgcaatgtgtatggtttggcaattaggccacaaaaagaacgtggatg |
31520038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 49497772 - 49497739
Alignment:
| Q |
76 |
atgcacgttgcttggtagtggatgcaaatgagtt |
109 |
Q |
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| T |
49497772 |
atgcacgttgattggtagtggatgcaaatgagtt |
49497739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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