View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_26 (Length: 269)
Name: NF20944_low_26
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 4803415 - 4803612
Alignment:
| Q |
16 |
attagtaatacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaattattagtaatattatgtgtt |
115 |
Q |
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| T |
4803415 |
attagtaatacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaagtattagtaat-ttatgtgtt |
4803513 |
T |
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| Q |
116 |
ttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgtagaacaca |
214 |
Q |
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| T |
4803514 |
ctgtgaaacatatttatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgtagaacaca |
4803612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4798625 - 4798677
Alignment:
| Q |
146 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
198 |
Q |
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| T |
4798625 |
cccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaa |
4798677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 4803621 - 4803665
Alignment:
| Q |
208 |
gaacacagaagtgagatgttattagaaaaatgcaatgcggcattg |
252 |
Q |
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| T |
4803621 |
gaacacagaagtgagatgttattagaaaaatgctatgcggcattg |
4803665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 4825401 - 4825482
Alignment:
| Q |
115 |
tttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataa |
197 |
Q |
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| T |
4825401 |
tttgtgaaacatatgtagagcgataggttgtcccacatcggatgtttcagaagcatagaga-gtagaccaccattataaataa |
4825482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 4817795 - 4817835
Alignment:
| Q |
158 |
gtttgagaagcttagagatgtaaactaccattataaataaa |
198 |
Q |
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| T |
4817795 |
gtttgagaaacttagagatgtaaactactattataaataaa |
4817835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4804812 - 4804864
Alignment:
| Q |
146 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
198 |
Q |
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| T |
4804812 |
cccacatcggatgtttgagaatcttagagaggcaaactatcattataaataaa |
4804864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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