View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_3 (Length: 574)
Name: NF20944_low_3
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 2 - 555
Target Start/End: Original strand, 10402825 - 10403378
Alignment:
| Q |
2 |
gcatgtccaagaatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatt |
101 |
Q |
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| T |
10402825 |
gcatttccaataatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatt |
10402924 |
T |
|
| Q |
102 |
tcaatgattttgttccatatctcttatcactatccccagctacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10402925 |
tcaatgattttgttccatatctcttatcactatccccagccacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctt |
10403024 |
T |
|
| Q |
202 |
tttgggactagaatcactagtaacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattga |
301 |
Q |
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| T |
10403025 |
tttgggactagaatcaccagtaacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattga |
10403124 |
T |
|
| Q |
302 |
ttaaaccatattataccctcttgaaaaatgttacacttttgggttatttgatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcac |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403125 |
ttaaaccatattataccctcttgaaaaatgttacacttttgggttattttatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcac |
10403224 |
T |
|
| Q |
402 |
cacgacacatgaagagtccaaatattgtaccatccacatcatctttatgaaatatgcttttagtggcattagaagacaggtaagaaaaaagggttgtaag |
501 |
Q |
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| T |
10403225 |
cacgacacatgaagagtccaaatattgtaccatccacatcatctttatgaaatatgcttttagtggcattagaagacaagtaagaaaaaagggttgtaag |
10403324 |
T |
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| Q |
502 |
gtgaactttgaaagtgttgttaaaagtgaaggttttgttattacttgaacaatt |
555 |
Q |
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| T |
10403325 |
gtgaactttgaaagtgttgttaaaagtgaaggttttgttattacttgaacaatt |
10403378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 541
Target Start/End: Complemental strand, 20232072 - 20231553
Alignment:
| Q |
22 |
caaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatat |
121 |
Q |
| |
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||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
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| T |
20232072 |
caaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaat |
20231973 |
T |
|
| Q |
122 |
ctcttatcactatccccagctacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactagaatcactag |
221 |
Q |
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| T |
20231972 |
ctttcatcactatctcctgccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactag |
20231873 |
T |
|
| Q |
222 |
taacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattgattaaaccatattataccctc |
321 |
Q |
| |
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||| |||||| |||| ||| |||||| |||||||||||| ||||||||||||||||| ||||| | ||||||||||||| || |||| ||||||||||| |
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| T |
20231872 |
taatattcatctcataatagacatgagttttgtccactatagagaagaaattccaattcgaataccgaatcatgcattgagtataccaaattataccctc |
20231773 |
T |
|
| Q |
322 |
ttgaaaaatgttacacttttgggttatttgatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcaccacgacacatgaagagtcca |
421 |
Q |
| |
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||||||||||||||||| || | ||||| ||||||||||||| |||||| || |||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
20231772 |
ttgaaaaatgttacactctttgcttattctttgtgttgcatttttcacacactgctcacataacgaaaagggaacatcgccacggcacatgaagagtcca |
20231673 |
T |
|
| Q |
422 |
aatattgtaccatccacatcatctttatgaaatatgcttttagtggcattagaagacaggtaagaaaaaagggttgtaaggtgaactttgaaagtgttgt |
521 |
Q |
| |
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| T |
20231672 |
aaagttgtattttcaacttcagctttatgaaatagacttttagtggcattagaagacatgtaggaaaaaagggttgtaaggtgtttcttgaaagtgttac |
20231573 |
T |
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| Q |
522 |
taaaagtgaaggttttgtta |
541 |
Q |
| |
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|||||||||||||||||||| |
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| T |
20231572 |
taaaagtgaaggttttgtta |
20231553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 541
Target Start/End: Complemental strand, 22126056 - 22125537
Alignment:
| Q |
22 |
caaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatat |
121 |
Q |
| |
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||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
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| T |
22126056 |
caaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaat |
22125957 |
T |
|
| Q |
122 |
ctcttatcactatccccagctacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactagaatcactag |
221 |
Q |
| |
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|| | ||||||||| || || ||||||||||| |||||||||| | ||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
22125956 |
ctttcatcactatctcctgccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactag |
22125857 |
T |
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| Q |
222 |
taacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattgattaaaccatattataccctc |
321 |
Q |
| |
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||| |||||| |||| ||| |||||| |||||||||||| ||||||||||||||||| ||||| | ||||||||||||| || |||| ||||||||||| |
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| T |
22125856 |
taatattcatctcataatagacatgagttttgtccactatagagaagaaattccaattcgaataccgaatcatgcattgagtataccaaattataccctc |
22125757 |
T |
|
| Q |
322 |
ttgaaaaatgttacacttttgggttatttgatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcaccacgacacatgaagagtcca |
421 |
Q |
| |
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||||||||||||||||| || | ||||| ||||||||||||| |||||| || |||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
22125756 |
ttgaaaaatgttacactctttgcttattctttgtgttgcatttttcacacactgctcacataacgaaaagggaacatcgccacggcacatgaagagtcca |
22125657 |
T |
|
| Q |
422 |
aatattgtaccatccacatcatctttatgaaatatgcttttagtggcattagaagacaggtaagaaaaaagggttgtaaggtgaactttgaaagtgttgt |
521 |
Q |
| |
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|| ||||| || || ||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |
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| T |
22125656 |
aaagttgtattttcaacttcagctttatgaaatagacttttagtggcattagaagacatgtaggaaaaaagggttgtaaggtgtttcttgaaagtgttac |
22125557 |
T |
|
| Q |
522 |
taaaagtgaaggttttgtta |
541 |
Q |
| |
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|||||||||||||||||||| |
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| T |
22125556 |
taaaagtgaaggttttgtta |
22125537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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