View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_5 (Length: 539)
Name: NF20944_low_5
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 42604710 - 42604198
Alignment:
| Q |
8 |
cgaagaatatcattgagagcatgccagtgactgtgaaacccaacaaagtcatttggatgagtttgcttggtggtgctaggaaccatggaaacctggaaat |
107 |
Q |
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| T |
42604710 |
cgaaaaatatcattgagagcatgccagtgactgtgaaacccaacaaagtcatttggatgagtttgcttggtggtgctaggaaccatggaaacctggaaat |
42604611 |
T |
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| Q |
108 |
tggtgaatatgcagcccgtaatttgattgaaaaggattcagatgctcgtactgggtgctatactgtactttctaacatgtatgctgcagctgggaagtgg |
207 |
Q |
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| T |
42604610 |
tggtgaatatgcagcccgtaatttgattgaaaaggattcagatgctcgtactgggtgctatactgtactttctaacatgtatgctgcagctgggaagtgg |
42604511 |
T |
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| Q |
208 |
gataaagtttcacatgtaagagaaatgatgaaaaacagaggagtggttaaggatgctggatgcagcatcattgagtacaagggtcaacttcatcggttta |
307 |
Q |
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| T |
42604510 |
gataaagtttcacatgtaagagaaatgatgaaaaacagaggagtggttaaggatgctggatgcagcatcattgagtacaagggtcaacttcatcggttta |
42604411 |
T |
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| Q |
308 |
tagtgggcgataaatcacatcctcaaacccaggatatatatgcaaagttgagggaaataagggagaaactgaaactggagggacatgttcctgacacaag |
407 |
Q |
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| T |
42604410 |
tagtgggcgataaatcacatcctcaaacccaggatatatatgcaaagttgagggaaataagggagaaactgaaactggagggacatgt--ctgacacaag |
42604313 |
T |
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| Q |
408 |
ccaagttctactaaacattgaaggtgagaaggaaaacgaatctgaattagaaaaccacagtgagaggttagccatttcgtttggcctcatcaatatgtaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42604312 |
ccaagttctactaaacattgaaggtgagaaggaaaaagaatctgaattagaaaaccacagtgagaggttagccatttcgtttggcctcatcaatatggaa |
42604213 |
T |
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| Q |
508 |
agaagagctcctatt |
522 |
Q |
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| T |
42604212 |
agaagagctcctatt |
42604198 |
T |
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