View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20945_high_6 (Length: 368)
Name: NF20945_high_6
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 51111486 - 51111147
Alignment:
| Q |
16 |
agcagagaaagcaagtaacatagcaaatgcagccaaggaaaccatagcctcaaactatgaagctgcaaagcaaaaattgggtggacaacgccgagatcct |
115 |
Q |
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| T |
51111486 |
agcagagaaagcaagtaacatagcaaatgcagccaaggaaaccatagcctcaaactatgaagctgcaaagcaaaaattgggtggacaacgccgagatcct |
51111387 |
T |
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| Q |
116 |
gagctttaagcttttcatgatgacatcttctatagaagagaagatctttctt--gtgtgtatatatatcatcatatatgggagtagtaatctttttcttt |
213 |
Q |
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| T |
51111386 |
gagctttaagcttctcatgatgacatcttctatagaagagaagacctttcttatgtgtgtgtatatatcatcatatatgggagtagtaatctttttcttt |
51111287 |
T |
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| Q |
214 |
gttttgttgtttgctagtgctgtgtttggtctctcatgatagcaaccacatagcacatgtcagaacattttgtgtcaagtcgaatatgtttttgtttctt |
313 |
Q |
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| T |
51111286 |
gttttgttgtttgctagtgctgtgtttggtctctcatgatagcaaccacatagcacaagtcagaacattttgtatcaagtcgaatatgtttttgtttctt |
51111187 |
T |
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| Q |
314 |
aagagcttaaaaaataatagtcaccattccccctatatat |
353 |
Q |
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| T |
51111186 |
aagagcttaaaaaataatagtcaccattccccctatatat |
51111147 |
T |
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