View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20945_low_1 (Length: 523)

Name: NF20945_low_1
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20945_low_1
NF20945_low_1
[»] chr3 (20 HSPs)
chr3 (221-421)||(6003942-6004142)
chr3 (223-417)||(21586403-21586591)
chr3 (314-421)||(50562223-50562330)
chr3 (305-419)||(35531790-35531904)
chr3 (305-421)||(33002851-33002967)
chr3 (305-421)||(32880640-32880756)
chr3 (315-421)||(39098272-39098378)
chr3 (223-367)||(48032692-48032836)
chr3 (270-419)||(43030762-43030892)
chr3 (223-318)||(10369619-10369719)
chr3 (270-318)||(34794932-34794980)
chr3 (270-318)||(51149335-51149383)
chr3 (374-421)||(27641870-27641917)
chr3 (273-313)||(32880738-32880778)
chr3 (270-318)||(35401837-35401885)
chr3 (223-313)||(27641773-27641868)
chr3 (294-327)||(10481202-10481235)
chr3 (274-318)||(33361321-33361365)
chr3 (270-318)||(4669260-4669308)
chr3 (295-323)||(55467226-55467254)
[»] chr2 (15 HSPs)
chr2 (220-419)||(34910645-34910844)
chr2 (19-146)||(34910919-34911046)
chr2 (223-421)||(25297807-25298005)
chr2 (223-417)||(44979326-44979520)
chr2 (223-419)||(18360136-18360332)
chr2 (223-421)||(11376220-11376413)
chr2 (307-420)||(17916493-17916606)
chr2 (305-419)||(19936753-19936867)
chr2 (273-419)||(44035645-44035786)
chr2 (270-318)||(9811748-9811796)
chr2 (270-318)||(20420786-20420834)
chr2 (270-318)||(36412964-36413012)
chr2 (273-318)||(42785136-42785181)
chr2 (270-314)||(16579002-16579046)
chr2 (295-324)||(43612644-43612673)
[»] chr6 (11 HSPs)
chr6 (223-419)||(35039489-35039685)
chr6 (270-421)||(33550657-33550803)
chr6 (223-421)||(13801533-13801726)
chr6 (223-421)||(25137478-25137675)
chr6 (300-420)||(15860063-15860182)
chr6 (305-421)||(10591172-10591288)
chr6 (223-339)||(10390591-10390707)
chr6 (270-318)||(5866685-5866733)
chr6 (270-318)||(12270914-12270962)
chr6 (294-327)||(20501026-20501059)
chr6 (304-357)||(10494023-10494076)
[»] chr5 (31 HSPs)
chr5 (223-421)||(2226434-2226632)
chr5 (223-421)||(12165494-12165692)
chr5 (223-421)||(12680626-12680824)
chr5 (223-419)||(36103162-36103358)
chr5 (224-419)||(9161318-9161511)
chr5 (300-419)||(38434021-38434140)
chr5 (223-419)||(30265349-30265539)
chr5 (223-399)||(36176440-36176616)
chr5 (223-421)||(32520776-32520969)
chr5 (223-421)||(10174396-10174586)
chr5 (305-419)||(332914-333030)
chr5 (310-419)||(17084513-17084622)
chr5 (223-379)||(36176671-36176827)
chr5 (336-419)||(35893322-35893405)
chr5 (223-309)||(42545822-42545913)
chr5 (324-417)||(42544993-42545086)
chr5 (270-318)||(666935-666983)
chr5 (270-318)||(701575-701623)
chr5 (270-318)||(8409344-8409392)
chr5 (270-318)||(11917813-11917861)
chr5 (270-318)||(27885750-27885798)
chr5 (359-418)||(23781065-23781124)
chr5 (359-418)||(23868018-23868077)
chr5 (223-318)||(23781143-23781236)
chr5 (223-318)||(23868096-23868189)
chr5 (270-318)||(30002356-30002404)
chr5 (270-318)||(38334418-38334466)
chr5 (282-363)||(9988515-9988593)
chr5 (270-318)||(15068834-15068882)
chr5 (369-420)||(9988586-9988637)
chr5 (300-332)||(15068825-15068857)
[»] chr4 (22 HSPs)
chr4 (223-419)||(40899635-40899831)
chr4 (270-421)||(6333650-6333801)
chr4 (223-419)||(48996415-48996611)
chr4 (310-421)||(8176240-8176351)
chr4 (230-421)||(30193538-30193729)
chr4 (240-421)||(32137026-32137207)
chr4 (311-418)||(10219020-10219127)
chr4 (305-413)||(40806453-40806561)
chr4 (270-414)||(52345048-52345187)
chr4 (305-419)||(23937155-23937269)
chr4 (300-380)||(43630908-43630988)
chr4 (310-420)||(31301734-31301845)
chr4 (310-381)||(52345225-52345296)
chr4 (223-348)||(26477744-26477869)
chr4 (270-318)||(29640003-29640051)
chr4 (270-318)||(42558091-42558139)
chr4 (270-318)||(50570625-50570673)
chr4 (223-317)||(5261406-5261505)
chr4 (281-318)||(36078692-36078729)
chr4 (270-318)||(29643374-29643422)
chr4 (294-327)||(45464622-45464655)
chr4 (274-318)||(51395262-51395306)
[»] chr7 (25 HSPs)
chr7 (223-421)||(43429502-43429700)
chr7 (223-421)||(42910232-42910425)
chr7 (221-420)||(31876195-31876389)
chr7 (310-421)||(32823930-32824041)
chr7 (230-419)||(27054286-27054475)
chr7 (300-419)||(24360921-24361040)
chr7 (305-421)||(36921184-36921302)
chr7 (223-410)||(13852651-13852838)
chr7 (310-421)||(22366784-22366895)
chr7 (270-418)||(18672823-18672966)
chr7 (310-421)||(10069897-10070008)
chr7 (310-419)||(31982299-31982408)
chr7 (223-420)||(5932959-5933150)
chr7 (305-421)||(48675446-48675562)
chr7 (223-421)||(47903568-47903751)
chr7 (315-377)||(36509024-36509086)
chr7 (270-318)||(3211809-3211857)
chr7 (270-318)||(10672187-10672235)
chr7 (270-318)||(47070036-47070084)
chr7 (270-318)||(47204124-47204172)
chr7 (223-266)||(1335889-1335932)
chr7 (270-313)||(8768333-8768376)
chr7 (270-308)||(11206045-11206083)
chr7 (273-327)||(37376226-37376280)
chr7 (221-318)||(12117968-12118070)
[»] scaffold0059 (2 HSPs)
scaffold0059 (226-419)||(69089-69282)
scaffold0059 (226-419)||(77195-77388)
[»] chr1 (21 HSPs)
chr1 (224-421)||(39256187-39256384)
chr1 (223-421)||(16529042-16529240)
chr1 (223-421)||(24910604-24910802)
chr1 (303-421)||(33910407-33910525)
chr1 (310-419)||(51252058-51252167)
chr1 (279-419)||(11899375-11899510)
chr1 (305-421)||(32954413-32954529)
chr1 (300-421)||(33474775-33474896)
chr1 (315-419)||(44918877-44918981)
chr1 (223-417)||(45692134-45692323)
chr1 (305-383)||(6722450-6722527)
chr1 (223-318)||(29707697-29707792)
chr1 (270-318)||(5155000-5155048)
chr1 (270-318)||(8211648-8211696)
chr1 (374-421)||(29389366-29389413)
chr1 (223-339)||(1160584-1160699)
chr1 (353-421)||(1160698-1160766)
chr1 (294-327)||(8165127-8165160)
chr1 (294-327)||(17652189-17652222)
chr1 (281-318)||(20494103-20494140)
chr1 (226-266)||(51251984-51252024)
[»] chr8 (15 HSPs)
chr8 (226-413)||(6200490-6200677)
chr8 (270-421)||(36827395-36827541)
chr8 (300-414)||(30392420-30392534)
chr8 (223-421)||(14549562-14549755)
chr8 (305-421)||(3682252-3682368)
chr8 (223-419)||(33068928-33069119)
chr8 (310-421)||(18169664-18169775)
chr8 (310-421)||(18633230-18633341)
chr8 (300-419)||(10661484-10661603)
chr8 (224-370)||(44673109-44673255)
chr8 (223-332)||(3006188-3006297)
chr8 (305-421)||(36909976-36910081)
chr8 (223-313)||(5802507-5802602)
chr8 (294-325)||(31497645-31497676)
chr8 (310-342)||(42496533-42496565)
[»] scaffold0013 (2 HSPs)
scaffold0013 (226-419)||(106371-106564)
scaffold0013 (302-419)||(128978-129095)
[»] scaffold0029 (3 HSPs)
scaffold0029 (300-421)||(47398-47519)
scaffold0029 (300-421)||(40202-40323)
scaffold0029 (294-326)||(40621-40653)
[»] scaffold0308 (1 HSPs)
scaffold0308 (270-318)||(5520-5568)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 221 - 421
Target Start/End: Original strand, 6003942 - 6004142
Alignment:
Q  221 cacacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaa 315  Q
    ||||||||||||| |||||||| ||||||||||||| | |||||||  ||||   ||||||| |||||||||||| ||| ||||||||     |||||||    
T  6003942 cacacttggttcggatgaattcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaacc-----aaaccaa 6004036  T
Q  316 accaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcacc 415  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6004037 accaaaccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcacc 6004136  T
Q  416 atcagg 421  Q
    ||||||    
T  6004137 atcagg 6004142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 223 - 417
Target Start/End: Original strand, 21586403 - 21586591
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaac 322  Q
    ||||||||||| |||||||  ||||||||||||| |||||||||   |||||||| | |||||||||| |||||||||||||||||||      |||||     
T  21586403 cacttggttcggatgaatttggatgacttttgcactaaaccgcgcggttcggtttgcagtttgcatctcagcaaccgaaccaaaccaa------ccaaat 21586496  T
Q  323 cgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  21586497 cgcaagaataatgaatattacttaaacatgtactagccaaattacatagttcaagaataatatctttcgattcgatttttccattgttgcaccat 21586591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 50562223 - 50562330
Alignment:
Q  314 aaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgca 413  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  50562223 aaaccaaaccccaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttccattgttgca 50562322  T
Q  414 ccatcagg 421  Q
    ||||||||    
T  50562323 ccatcagg 50562330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 35531790 - 35531904
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||   |||| |||||||||||||    
T  35531790 aaccgaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattgcatagctcaagaataatcgttttttattcgatttttcc 35531889  T
Q  405 attgttgcaccatca 419  Q
    |||||||||||||||    
T  35531890 attgttgcaccatca 35531904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 33002967 - 33002851
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||||| |  ||||||||||||| ||| |||||| ||||||||||||||||||||    
T  33002967 aaccaaactaaaccaaaccgcaagaataatgaatatttcttaaatatgtaccagtccaattacatagctcaataataatctcttttgattcgatttttcc 33002868  T
Q  405 attgttgcaccatcagg 421  Q
    |||||||||||||||||    
T  33002867 attgttgcaccatcagg 33002851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 32880756 - 32880640
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||| |||| |||||||||    
T  32880756 aaccgaaccaaaccaaaccgcaagaaaaatgaatattacttaaacatgtactagtccaattacatagctcaagtttaatctctttcgatttgatttttcc 32880657  T
Q  405 attgttgcaccatcagg 421  Q
    |||||||||||||||||    
T  32880656 attgttgcaccatcagg 32880640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 315 - 421
Target Start/End: Complemental strand, 39098378 - 39098272
Alignment:
Q  315 aaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcac 414  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| | |||||| ||||||||| |||||||||||    
T  39098378 aaccgaaccgcaagaataatgaatattacttaaacatgtactaacacaattaaatagctcaagaataatcttttttgaatcgattttttcattgttgcac 39098279  T
Q  415 catcagg 421  Q
    |||||||    
T  39098278 catcagg 39098272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 367
Target Start/End: Original strand, 48032692 - 48032836
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||  |||||||| ||||||||||||||| |||||||  |||   || ||||| |||||||||||| |||| |||||||     |||||||||    
T  48032692 cacttggttcagatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaacc-----aaaccaaac 48032786  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattac 367  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  48032787 caaaccgcaagaatcatgaatattacttaaacatgtactagcccaattac 48032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 43030892 - 43030762
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacat 369  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    |||||||||||||||||||               ||||| || ||||||||    
T  43030892 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaacca----aaaccgcaagaataatgaa---------------tactagccaaattacat 43030812  T
Q  370 agcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
    ||| |||||||||| | ||| |||||||||||||||||||||||||||||    
T  43030811 agctcaagaataatctttttcgattcgatttttccattgttgcaccatca 43030762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 10369719 - 10369619
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||  | | |||||||  |||   |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10369719 cacttggttcggatgaattcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaac 10369620  T
Q  318 c 318  Q
    |    
T  10369619 c 10369619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 34794980 - 34794932
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  34794980 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 34794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 51149335 - 51149383
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  51149335 ttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaacc 51149383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 27641870 - 27641917
Alignment:
Q  374 caagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  27641870 caagaataatctcttttgattcgatttttccattgtagcaccatcagg 27641917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 32880778 - 32880738
Alignment:
Q  273 ggtttacggtttgcatctgagcaaccgaaccaaaccaaacc 313  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  32880778 ggtttacggtttgcatctcagcaaccgaaccaaaccaaacc 32880738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 35401837 - 35401885
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  35401837 ttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaacc 35401885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 27641773 - 27641868
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaacc 313  Q
    ||||||||||| |||||||||||||||||||||| | ||||||  ||||   || ||||| |||||||||||| ||| ||  ||||||||||||||    
T  27641773 cacttggttcggatgaattcagatgacttttgcactgaaccgcgtggtttgatttggtttgcggtttgcatctcagccactaaaccaaaccaaacc 27641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 10481202 - 10481235
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgcaa 327  Q
    ||||||||||||||||||||||||||||||||||    
T  10481202 caaccgaaccaaaccaaaccaaaccaaaccgcaa 10481235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 33361365 - 33361321
Alignment:
Q  274 gtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  33361365 gtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaacc 33361321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 4669260 - 4669308
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| || ||||||||| ||||||| ||||||||||||| |||||    
T  4669260 ttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaacc 4669308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 55467226 - 55467254
Alignment:
Q  295 aaccgaaccaaaccaaaccaaaccaaacc 323  Q
    |||||||||||||||||||||||||||||    
T  55467226 aaccgaaccaaaccaaaccaaaccaaacc 55467254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 220 - 419
Target Start/End: Complemental strand, 34910844 - 34910645
Alignment:
Q  220 tcacacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtt----------tacggtttgcatctgagcaaccgaaccaaacca 309  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||          ||||||||| ||||||||||||||| |||||||    
T  34910844 tcacacttggttcggatgaattcagatgacttttgcaataaaccgcgcgtttcggttcggtttggtttacggtttgaatctgagcaaccgaaacaaacca 34910745  T
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34910744 aacc----------gcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 34910655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 34911046 - 34910919
Alignment:
Q  19 ccttccgacttctaaatttaaaaattaaatcactattctcacgatttacaatgggcagggatcctctaagtaaacttcaatgagaattacaaaaatccta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34911046 ccttccgacttctaaatttaaaaattaaatcactattctcacgatttacaatgggcagggatcctctaagtaaacttcaatgagaattacaaaaatccta 34910947  T
Q  119 tgctctcatgtcactgttctatgaaaac 146  Q
    ||||| |||||||  |||||||||||||    
T  34910946 tgctcgcatgtcagggttctatgaaaac 34910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 25297807 - 25298005
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    |||||| |||| |||||||| ||||||||||||  | ||||||  ||||   || |||||  ||||||||||| ||||||||||||     |||||||||    
T  25297807 cacttgattcggatgaattcggatgacttttgctttgaaccgcacggttcggtttggtttgtggtttgcatctcagcaaccgaacc-----aaaccaaac 25297901  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  25297902 caaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatcgcttttgattcgatttttccattgttgcaccat 25298001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 223 - 417
Target Start/End: Original strand, 44979326 - 44979520
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||| ||||||| | |||||||  ||||   | ||||| |||||||||||| ||| ||||||||     |||||||||    
T  44979326 cacttggttcggatgaattcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaacc-----aaaccaaac 44979420  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  44979421 caaaccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaggaataatctcttttgattcgatttttccattgttgcaccat 44979520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 223 - 419
Target Start/End: Complemental strand, 18360332 - 18360136
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaacc--gcggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| || |||||  |||||||||||| | ||||  ||||||   || ||||||| |||||||||| ||||||||||||||||||||||||||    
T  18360332 cacttggttcggataaattcgaatgacttttgcattgaaccacgcggttcggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaac 18360233  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |     ||||||||||| |||||||||||||| ||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  18360232 c-----gcaagaataatcaatattacttaaacttgtactagcccaattacatagcccgaaaataatctcttttgattcgatttttccattgttgcaccat 18360138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 11376413 - 11376220
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||||||||||||||||| | |||||||  |||   |||||||| | |||||||||| |||||| |||||||||||||||        
T  11376413 cacttggttcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaaccaaacc---- 11376318  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
          ||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  11376317 ------gcaagaatactgaatattacttaaacatgtactagctcaattgcatagcccaagaataatcgcttttgattcgatttttccattgttgcaccat 11376224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 307 - 420
Target Start/End: Original strand, 17916493 - 17916606
Alignment:
Q  307 ccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||  |||||||||    
T  17916493 ccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgattcattttttccat 17916592  T
Q  407 tgttgcaccatcag 420  Q
    | ||||||||||||    
T  17916593 tattgcaccatcag 17916606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 19936753 - 19936867
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||| |||||||||||| |||||||||||||||| |    
T  19936753 aaccaaaccaaaccaaaccgcaagaataatgaatattacttatacatgtactagctcaaatacatagctcaagaataatatattttgattcgattttttc 19936852  T
Q  405 attgttgcaccatca 419  Q
    |||||||||||||||    
T  19936853 attgttgcaccatca 19936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 44035786 - 44035645
Alignment:
Q  273 ggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagc 372  Q
    |||||||||||||||||| |||||||||||||||||||||||||||     |||| ||||||||||||||||||||||||||||| | || ||||||| |    
T  44035786 ggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaacc-----gcaaaaataatgaatattacttaaacatgtactagctcagttacataac 44035692  T
Q  373 ccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
     |||||||||| |||||||||||||||||| ||||||||||| ||||    
T  44035691 tcaagaataatctcttttgattcgattttttcattgttgcacgatca 44035645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 9811796 - 9811748
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  9811796 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 9811748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 20420834 - 20420786
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  20420834 ttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaacc 20420786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 36412964 - 36413012
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  36412964 ttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaacc 36413012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 42785136 - 42785181
Alignment:
Q  273 ggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||| |||||||||||| || ||||||||||||||||||||||||    
T  42785136 ggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaacc 42785181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 16579046 - 16579002
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaacca 314  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||    
T  16579046 ttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca 16579002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 43612644 - 43612673
Alignment:
Q  295 aaccgaaccaaaccaaaccaaaccaaaccg 324  Q
    ||||||||||||||||||||||||||||||    
T  43612644 aaccgaaccaaaccaaaccaaaccaaaccg 43612673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 223 - 419
Target Start/End: Original strand, 35039489 - 35039685
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||  | |||||||  ||||   ||||||| ||||||||||||   ||||  ||||||||||||||||||    
T  35039489 cacttggttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatct---caac--aaccaaaccaaaccaaac 35039583  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35039584 caaaccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccat 35039683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 33550803 - 33550657
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacat 369  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||     |||||||||||||||||||||||||||||||||| |||||||||||    
T  33550803 ttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaacc-----gcaagaataatgaatattacttaaacatgtactagcccaattacat 33550709  T
Q  370 agcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33550708 agcccaagaataatctcttttgattcgatttttccattgttgcaccatcagg 33550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 13801533 - 13801726
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaac 322  Q
    ||||||||||| |||||||| ||||||||||| | | ||||||    |||||||| |||||||||||| | |||| |     ||||||||||||||||||    
T  13801533 cacttggttcggatgaattcggatgacttttgtattgaaccgcatggttcggtttgcggtttgcatctcatcaactg-----aaccaaaccaaaccaaac 13801627  T
Q  323 cgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  13801628 cgcaagaataatgaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccattgttgcaccatcagg 13801726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 25137675 - 25137478
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggttta----cggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||||||| |||||||| ||||||||||||| | |||||||   || |||||     |||| ||||||| | ||||||||||||||  |||||||||    
T  25137675 cacttggttcggatgaattcggatgacttttgcactgaaccgcgcggtttggtttggttgcggtatgcatctcatcaaccgaaccaaactgaaccaaacc 25137576  T
Q  319 aaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
    |     ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||    
T  25137575 a-----caataataatgaatattacttaaacatgtactatcccaattacatagcccaagaataatctcttttgattcgattttttcaatattgcaccatc 25137481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 15860182 - 15860063
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||| || |    
T  15860182 aaccgaaccaaaccaaaccaaactgcaagaataatgaatattaattaaacatgtactagcccaattacatagctcaagaataatctcttttgattaga-t 15860084  T
Q  400 tttccattgttgcaccatcag 420  Q
    |||||||||||||||||||||    
T  15860083 tttccattgttgcaccatcag 15860063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 10591288 - 10591172
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||| |||||||||||| |    
T  10591288 aaccaaaccaaactgaaccgcaagaataatgaatattacttaaacatgtaatagcccaattacatagctcaagaataatgtctttcgattcgattttttc 10591189  T
Q  405 attgttgcaccatcagg 421  Q
    ||||||| |||||||||    
T  10591188 attgttgtaccatcagg 10591172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 10390591 - 10390707
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| ||||||||| |||||||||||| | |||||||  |||   |||| ||| |||||||||||| ||||||||     |||||||||||||    
T  10390591 cacttggttcggatgaattcaaatgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatctcagcaaccg-----aaccaaaccaaac 10390685  T
Q  318 caaaccgcaagaataatgaata 339  Q
    ||||||||||||||||||||||    
T  10390686 caaaccgcaagaataatgaata 10390707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 5866685 - 5866733
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  5866685 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 5866733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 12270962 - 12270914
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  12270962 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 12270914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 20501059 - 20501026
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgcaa 327  Q
    ||||||||||||||||||||||||||||||||||    
T  20501059 caaccgaaccaaaccaaaccaaaccaaaccgcaa 20501026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 10494023 - 10494076
Alignment:
Q  304 aaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtacta 357  Q
    ||||||||||||||||||| |||||||||||   | |||||||||| |||||||    
T  10494023 aaaccaaaccaaaccaaactgcaagaataatcgttgttacttaaacttgtacta 10494076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 2226434 - 2226632
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | |||||||  |||   |||||||| |||||||||||| ||||||||||||     |||||||||    
T  2226434 cacttggttcggatgaattcggatgacttttgcacttaaccgcgcggttcagttcggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaac 2226528  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    
T  2226529 caaaccgccagaataatgaatattacttaaacatgtattagcccaattacatagctcatgaataatctcttttgattcgatttttccattgttgcaccat 2226628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 12165494 - 12165692
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | ||||||  ||||   |||||||| | |||||||||| |||||| ||||||||| ||||         
T  12165494 cacttggttcggatgaattcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacgaaac----- 12165588  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||    
T  12165589 caaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatctttccattgttgcaccat 12165688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 12680626 - 12680824
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||  |||||||| ||||||||||||||| |||||||  ||||   | ||||| |||||||||||| ||||||||||||     |||||||||    
T  12680626 cacttggttcagatgaattcggatgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaac 12680720  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |  || |||||| |||||||||||||||||||||||||||||||||    
T  12680721 caaaccgcaagaatgatgaatattacttaaacatgtactagcccaattacataacttaaaaataatctcttttgattcgatttttccattgttgcaccat 12680820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 223 - 419
Target Start/End: Original strand, 36103162 - 36103358
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||||||||||||||||| | |||||||  |||   || |||||   |||||||||| ||||||||||||     |||||||||    
T  36103162 cacttggttcggatgaattcagatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaacc-----aaaccaaac 36103256  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||   |||||||||||||||||||||||||||||||    
T  36103257 caaaccgcaagaataatgaatattacttgaacatgtactagcccaactacatagctcaagaataatcgtttttgattcgatttttccattgttgcaccat 36103356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 419
Target Start/End: Complemental strand, 9161511 - 9161318
Alignment:
Q  224 acttggttcgaatgaattcagatgacttttgcaataaaccg--cggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||||| |||||||||||||||||||||| | |||||  |||||   |||||||| ||||||| |||| |||||||||||||||||||||| ||||    
T  9161511 acttggttcggatgaattcagatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaaccaaacccaacc 9161412  T
Q  319 aaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
         ||||||||||||||||||||||||| ||| |||| |||||  ||||||| ||  |||||| ||||||||||||||||||||||||||||||||||    
T  9161411 -----gcaagaataatgaatattacttaaatatgcactagcccaa--acatagctcagaaataatctcttttgattcgatttttccattgttgcaccatc 9161319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 38434140 - 38434021
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||| ||||||||    
T  38434140 aaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatt 38434041  T
Q  400 tttccattgttgcaccatca 419  Q
    ||||||||||||||||||||    
T  38434040 tttccattgttgcaccatca 38434021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 223 - 419
Target Start/End: Original strand, 30265349 - 30265539
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaac 322  Q
    |||||| |||| |||||||||||||||||||||| |||||||     |||||||| |||||||||||| ||||||||||||||| ||||||||| |        
T  30265349 cacttgattcggatgaattcagatgacttttgcactaaaccgtacggttcggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaatc---- 30265444  T
Q  323 cgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
     |||||||||||||||||||||||| ||||| ||| |||||||||||||| ||| |||||   ||||  ||||||||||||||||||||||||||||    
T  30265445 -gcaagaataatgaatattacttaatcatgtgctagcccaattacatagctcaaaaataa-cgctttcaattcgatttttccattgttgcaccatca 30265539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 223 - 399
Target Start/End: Original strand, 36176440 - 36176616
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  ||||    | ||||| |||||||||||| ||||||||||||||| ||||     |    
T  36176440 cacttggttcgaatgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaa-----c 36176534  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  36176535 caaaccgcaagaataatgactattacttaaacgtgtactagcccaattacatagctcaagaaaaatctcttttgattcgatt 36176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 32520776 - 32520969
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgc-atctgagcaaccgaaccaaaccaaaccaaaccaaa 321  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||   ||||||||  ||||||| |||||  || |  | |  |||| ||||||||||||    
T  32520776 cacttggttcggatgaattcggatgacttttgcaatgaaccgcgcggttcggttt--ggtttgcgatctg--catctcagc--aaccgaaccaaaccaaa 32520869  T
Q  322 ccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||    ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  32520870 ccgcaagaatgatgaatattacttaaagatgtactagcccaattacataatttaagaataatctcttttgattcgattttttcattgttgcaccatcagg 32520969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 10174586 - 10174396
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gttt--tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||| |||| |||||||| ||||||||||||| | |||||||  ||||  ||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  10174586 cacttgattcggatgaattcggatgacttttgcactgaaccgcgcggtttgttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 10174487  T
Q  319 aaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
         ||||    |||||||||||||||||||||||||| |||||||||||| | ||||   ||| |||||||||||||||||| |||||||||||||||    
T  10174486 -----gcaa----aatgaatattacttaaacatgtactatcccaattacataactcaag---aatctcttttgattcgattttttcattgttgcaccatc 10174399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 332914 - 333030
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattac--atagcccaagaataatatcttttgattcgattttt 402  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||  ||||| |||||||||| | ||||||||||||||||    
T  332914 aaccaaaccaaactaaaccgcaagaataatgaatattacttaaacatgtactggcccaattacatatagctcaagaataatctattttgattcgattttt 333013  T
Q  403 ccattgttgcaccatca 419  Q
    ||||  |||||||||||    
T  333014 ccataattgcaccatca 333030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 17084513 - 17084622
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||| |||||| | ||||||||||||||||||||| |    
T  17084513 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtactaacccaattacataatccaaaaataatctattttgattcgatttttccattat 17084612  T
Q  410 tgcaccatca 419  Q
    ||||||||||    
T  17084613 tgcaccatca 17084622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 36176671 - 36176827
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  ||||    | ||||| |||||||||||| ||||||||||||||| ||||     |    
T  36176671 cacttggttcgaatgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaa-----c 36176765  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaa 379  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||||    
T  36176766 caaaccgcaagaataatgactattacttaaacgtgtactagcccaattacatagctcaagaa 36176827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 35893405 - 35893322
Alignment:
Q  336 aatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||| ||||||| ||||||||||||||||    
T  35893405 aatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgatttgattttttcattgttgcaccatca 35893322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 42545913 - 42545822
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaacca 309  Q
    ||||||||||| |||||||||||||||||||||| |||||||||  |||   |||||||| |||||||||||| | ||||||||||||||||    
T  42545913 cacttggttcggatgaattcagatgacttttgcactaaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 42545086 - 42544993
Alignment:
Q  324 gcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||||||||||||||||||||| ||||| || |||||| ||||||| |||||||||| |  |||||||| | || | ||||||||||||||    
T  42545086 gcaagaataatgaatattacttaaatatgtaatagcccaataacatagctcaagaataatctaatttgattcaacttgttcattgttgcaccat 42544993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 666935 - 666983
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  666935 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 666983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 701623 - 701575
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  701623 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 701575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 8409392 - 8409344
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  8409392 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 8409344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 11917861 - 11917813
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  11917861 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 11917813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 27885750 - 27885798
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  27885750 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 27885798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 23781124 - 23781065
Alignment:
Q  359 cccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
    ||||||||| |||| |||||||||| |||||||||| |||||||||||||||| ||||||    
T  23781124 cccaattacttagctcaagaataatctcttttgatttgatttttccattgttgtaccatc 23781065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 23868077 - 23868018
Alignment:
Q  359 cccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
    ||||||||| |||| |||||||||| |||||||||| |||||||||||||||| ||||||    
T  23868077 cccaattacttagctcaagaataatctcttttgatttgatttttccattgttgtaccatc 23868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 23781236 - 23781143
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||| ||| |||| ||||||||||||||||| | ||| |||   |||||||  |||||||||||| |||||| ||||||| ||||||||||||    
T  23781236 cacttggatcggatgatttcagatgacttttgcactgaactgcgcggttcggtt--cggtttgcatctcagcaactgaaccaagccaaaccaaacc 23781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 23868189 - 23868096
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||| ||| |||| ||||||||||||||||| | ||| |||   |||||||  |||||||||||| |||||| ||||||| ||||||||||||    
T  23868189 cacttggatcggatgatttcagatgacttttgcactgaactgcgcggttcggtt--cggtttgcatctcagcaactgaaccaagccaaaccaaacc 23868096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 30002404 - 30002356
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  30002404 ttcggtttgcggtttacatctcagcaaccgaaccaaaccaaaccaaacc 30002356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 38334418 - 38334466
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  38334418 ttcggtttgcggtttgcatctcagcaaccgaaccaaactaaaccaaacc 38334466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 9988515 - 9988593
Alignment:
Q  282 tttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaa 363  Q
    ||||||||| | ||| |||| |||||||||||||||||||||||   |||||| ||||||| |||||| ||||||| |||||    
T  9988515 tttgcatctcaacaagcgaatcaaaccaaaccaaaccaaaccgc---aataatcaatattatttaaacttgtactagcccaa 9988593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 15068882 - 15068834
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| | ||||| |||||||||||||||||||    
T  15068882 ttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaacc 15068834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 9988586 - 9988637
Alignment:
Q  369 tagcccaagaataatatcttttgattcgatttttccattgttgcaccatcag 420  Q
    ||||||||||| ||| ||||||||||| |||||| |||| ||||||||||||    
T  9988586 tagcccaagaacaatctcttttgattcaattttttcattcttgcaccatcag 9988637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 15068857 - 15068825
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaata 332  Q
    |||||||||||||||||||||||||||| ||||    
T  15068857 aaccaaaccaaaccaaaccaaaccgcaaaaata 15068825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 223 - 419
Target Start/End: Original strand, 40899635 - 40899831
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||  | |||||||  ||||   ||||||| |||||||||||| ||||||||||||     |||||||||    
T  40899635 cacttggttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaac 40899729  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  40899730 caaaccgcaagaataatgaatgttacttaaacatgtaatagcccaattacatagcccaaggataatctcttttgattcgatttttccattgttgcaccat 40899829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 6333801 - 6333650
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacat 369  Q
    |||| ||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  6333801 ttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaactaaaccgcaagaataatgaatattacttaaatatgtactagcccaattacat 6333702  T
Q  370 agcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    ||| |||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  6333701 agctcaagaataatctcttttgattcaatttttccatcgttgcaccatcagg 6333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 223 - 419
Target Start/End: Complemental strand, 48996611 - 48996415
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggttta-----cggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| || ||||| ||||||||||||||| |||||||   ||||||||      |||||||||||| ||||||||||||||||||||||||||    
T  48996611 cacttggttcggatcaattcggatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaac 48996512  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |     |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  48996511 c-----gcaagaataatgaatattacttaaacatgtactagcctaattacatagcctaagaataatctcttttgattcgattttttcattgttgcaccat 48996417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 8176240 - 8176351
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  8176240 aaccaaaccaaaccgcaagaataatgaagattacttaaacatgtactagcccaattacatagcccaaaaataatctcttttgattcgatttttccattgt 8176339  T
Q  410 tgcaccatcagg 421  Q
    ||||||||||||    
T  8176340 tgcaccatcagg 8176351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 230 - 421
Target Start/End: Original strand, 30193538 - 30193729
Alignment:
Q  230 ttcgaatgaattcagatgacttttgcaataaaccg--cggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccg 324  Q
    |||| ||||||||  |||||||||||||| |||||  |||||   ||| |||| | |||||||||| ||||||||     ||||||||||||||| ||||    
T  30193538 ttcggatgaattcgtatgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccg-----aaccaaaccaaaccataccg 30193632  T
Q  325 caagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    |||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  30193633 caagaataatgaatattacttaaatatgtattatcccaattacatagctcaagaataatttcttttgattcgatttttccattgttgcaccatcagg 30193729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 240 - 421
Target Start/End: Complemental strand, 32137207 - 32137026
Alignment:
Q  240 ttcagatgacttttgcaataaaccg--cggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataat 334  Q
    ||||||||||||||||||| |||||  |||||   || ||||| |||||||||||| ||||||||||||||| ||||||||||||     ||||||| ||    
T  32137207 ttcagatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaacca-----caagaatgat 32137113  T
Q  335 gaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  32137112 gaatattacttaaacatgtactagcccaattacatagcttaagaataatttctttttattcgattttttcattgttgcaccatcagg 32137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 311 - 418
Target Start/End: Complemental strand, 10219127 - 10219020
Alignment:
Q  311 accaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgtt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| |||||||||||||||    
T  10219127 accaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcatttgattagatttttccattgtt 10219028  T
Q  411 gcaccatc 418  Q
    ||||||||    
T  10219027 gcaccatc 10219020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 305 - 413
Target Start/End: Original strand, 40806453 - 40806561
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||| |||||||||||||||||| |    
T  40806453 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaatatgtactagctcaattacatagctcaagaataatctcttttgattcgattttttc 40806552  T
Q  405 attgttgca 413  Q
    |||||||||    
T  40806553 attgttgca 40806561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 270 - 414
Target Start/End: Complemental strand, 52345187 - 52345048
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacat 369  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||  || ||| |||    
T  52345187 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc-----gcaagaataatgaatattacttaaacatgtactagtccgattgcat 52345093  T
Q  370 agcccaagaataatatcttttgattcgatttttccattgttgcac 414  Q
    ||| |||||||| |  ||||||||| |||||||||||| ||||||    
T  52345092 agctcaagaatagtcgcttttgatttgatttttccattattgcac 52345048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 23937155 - 23937269
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||||  ||||||||||| | |||||||||| ||||| |||| |||||||||    
T  23937155 aaccaaaccaaactaaaccgcaagaataataaatattacttaaacatatactagtccaattacataactcaagaataatctctttagatttgatttttcc 23937254  T
Q  405 attgttgcaccatca 419  Q
    |||||||||||||||    
T  23937255 attgttgcaccatca 23937269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 43630988 - 43630908
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaat 380  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||    
T  43630988 aaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaaaatgtaatagcccaactacatagctcaagaat 43630908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 31301845 - 31301734
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataa-tatcttttgattcgatttttccattg 408  Q
    |||| |||||||||||||||||||| |||||||||||||| |||| || |||||||||||| | ||||||||| | | |||| |||||| |||| |||||    
T  31301845 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtattagcccaattacataactcaagaataattttttttttattcgactttttcattg 31301746  T
Q  409 ttgcaccatcag 420  Q
    ||||||||||||    
T  31301745 ttgcaccatcag 31301734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 52345296 - 52345225
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaata 381  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  52345296 aaccgaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattgcatagctcaagaata 52345225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 26477744 - 26477869
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccg--cggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||| | |||||||  |||||   || ||||| |||||||||||| ||||||||||||     |||||||||    
T  26477744 cacttggttcggatgaattcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaac 26477838  T
Q  318 caaaccgcaagaataatgaatattacttaaa 348  Q
    ||| || ||||||||||||||||||||||||    
T  26477839 caatccacaagaataatgaatattacttaaa 26477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 29640051 - 29640003
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  29640051 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 29640003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 42558139 - 42558091
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  42558139 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 42558091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 50570625 - 50570673
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  50570625 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 50570673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 5261406 - 5261505
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    |||||| |||| |||||||||||||||||||||| | |||||||  |||   |||||||| |||||||||||| || || ||||||||| ||||||||||    
T  5261406 cacttgattcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagaaatcgaaccaaatcaaaccaaac 5261505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 36078729 - 36078692
Alignment:
Q  281 gtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||||| |||||||||||||||||||||||||||    
T  36078729 gtttgcatctcagcaaccgaaccaaaccaaaccaaacc 36078692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 29643374 - 29643422
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||||  || |||||||| |||||||||||||||||||||||||||    
T  29643374 ttcggtttgtggcttgcatctcagcaaccgaaccaaaccaaaccaaacc 29643422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 45464655 - 45464622
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgcaa 327  Q
    ||||||||||||||||||||||| ||||||||||    
T  45464655 caaccgaaccaaaccaaaccaaatcaaaccgcaa 45464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 51395306 - 51395262
Alignment:
Q  274 gtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||||||| |||||||| |  |||||||||||||||||||||    
T  51395306 gtttacggtttacatctgagaagtcgaaccaaaccaaaccaaacc 51395262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 43429700 - 43429502
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||  ||||   |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  43429700 cacttggttcggatgaattcggatgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaac 43429601  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |     ||||||||||||| |||||||||||| ||||||   ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||    
T  43429600 c-----gcaagaataatgactattacttaaacgtgtactcgtccaattacatagctcaagaaaaatctcttttgattcgatttttccattgttgcaccat 43429506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 42910232 - 42910425
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccg--cggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | |||||  |||||   |||||||| |||||||||||| ||||||||||||          ||||    
T  42910232 cacttggttcggatgaattcggatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc----------aaac 42910321  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  42910322 caaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgatttgatttttccattgttgcaccat 42910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 221 - 420
Target Start/End: Original strand, 31876195 - 31876389
Alignment:
Q  221 cacacttggttcgaatgaattcagatgacttttgcaataaaccg--cggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaa 315  Q
    |||||||| |||| |||||||| ||||||||||||||| |||||  |||||   || ||||| |||||||||||| |||||||          |||||||    
T  31876195 cacacttgattcggatgaattcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagcaacc----------aaaccaa 31876284  T
Q  316 accaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcacc 415  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  31876285 accaaaccgcaaaaataatgaatattacttaaacatgtactagcccagttacatagctcaagaataatctcttttaattcgatttttccattgttgcacc 31876384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 32824041 - 32823930
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  32824041 aaccaaaccaaaccgcatgaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcctttgattcgatttttccattgt 32823942  T
Q  410 tgcaccatcagg 421  Q
    ||||||||||||    
T  32823941 tgcaccatcagg 32823930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 230 - 419
Target Start/End: Original strand, 27054286 - 27054475
Alignment:
Q  230 ttcgaatgaattcagatgacttttgcaataaaccg--cggttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccg 324  Q
    |||| |||||||||||||||||||||| |||||||  || |||   | ||||| |||||||||| | ||||| ||||||     |||||||||||||||     
T  27054286 ttcggatgaattcagatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaacc-----aaaccaaaccaaacca 27054380  T
Q  325 caagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||    
T  27054381 caagaataatgaatattacttaaatatgtactagcccaattacataactcaagaataatctcttttgattcgattttttcattgttgcaccatca 27054475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 24360921 - 24361040
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||  ||||||||||||||    
T  24360921 aaccgaaccaaaccaaaccaaaccgcaagaataatgactattacttaaatatgtactagcccaattacatagctcaagaataatcccttttgattcgatt 24361020  T
Q  400 tttccattgttgcaccatca 419  Q
    ||| ||||||||||||||||    
T  24361021 ttttcattgttgcaccatca 24361040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 305 - 421
Target Start/End: Original strand, 36921184 - 36921302
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaa--cccaattacatagcccaagaataatatcttttgattcgattttt 402  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||  |||||||||||||||||    
T  36921184 aaccgaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccccaattacatagctcaagaataatcgcttttgattcgattttt 36921283  T
Q  403 ccattgttgcaccatcagg 421  Q
     ||||||||||||||||||    
T  36921284 tcattgttgcaccatcagg 36921302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 223 - 410
Target Start/End: Complemental strand, 13852838 - 13852651
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | ||||| |  |||   ||| |||| |||||||||||| |||||| |||||||||||||||||||    
T  13852838 cacttggttcggatgaattcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaaccaaaccaaaccaaac 13852739  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgtt 410  Q
          ||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  13852738 t-----gcaagaataatgaatattatttaaatatgtactaactcaattacatagctcaagaataatctcttttgattcgattttttcattgtt 13852651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 22366895 - 22366784
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| |||||  ||||| ||||||||||||    
T  22366895 aaccaaaccaaaccgcaagaataatgaatattactcaaacatgtactagcccaattacatagctcaagaataatctctttcaattcggtttttccattgt 22366796  T
Q  410 tgcaccatcagg 421  Q
    ||||||||||||    
T  22366795 tgcaccatcagg 22366784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 18672823 - 18672966
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacat 369  Q
    ||||||||  ||||||||||| ||||||||||||     ||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||    
T  18672823 ttcggtttgtggtttgcatctcagcaaccgaacc-----aaaccaaaccaaaccgcaataataatcaatattacttaaacttgtactagcccaattacat 18672917  T
Q  370 agcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
    ||| || ||||||| |||||||||| |||||||| ||||||||||||||    
T  18672918 agcacaggaataatctcttttgattagatttttctattgttgcaccatc 18672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 10070008 - 10069897
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||   ||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  10070008 aaccaaaccaaaccgcaagaataatcaatattacttaaacttgtaccggcccaattacatagcccaagaataatcttttttgatttgatttttccattgt 10069909  T
Q  410 tgcaccatcagg 421  Q
    ||||||||||||    
T  10069908 tgcaccatcagg 10069897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 31982299 - 31982408
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    |||||||||||||||||| |||||| |||||||||||||  ||||| | ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  31982299 aaccaaaccaaaccgcaaaaataatcaatattacttaaatttgtaccagcccaattacatagcccaagaataatctcttttgatttgatttttccattgt 31982398  T
Q  410 tgcaccatca 419  Q
    ||||||||||    
T  31982399 tgcaccatca 31982408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 420
Target Start/End: Complemental strand, 5933150 - 5932959
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg-------gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaac 312  Q
    ||||||||||| || ||||||||||||||||||| | |||||||       |||   |||||||| ||||||| |||| |||||||||||||||||||||    
T  5933150 cacttggttcggataaattcagatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaaccaaaccaaac 5933051  T
Q  313 caaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgc 412  Q
    |||| |     | |||||||||||      ||||||||||||||| |||||||||||||| |||||||||| |||     ||||||||||||||||||||    
T  5933050 caaatc-----gtaagaataatga------cttaaacatgtactagcccaattacatagctcaagaataatctct-----ttcgatttttccattgttgc 5932967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 48675562 - 48675446
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||||||| ||| ||||||| ||||||||| ||||||||||||||||||| || || |||||||||||  || |||||  ||||||| || |||| ||||    
T  48675562 aaccaaacaaaatcaaaccgtaagaataataaatattacttaaacatgtattagcctaattacatagctaaaaaataacctcttttggtttgattattcc 48675463  T
Q  405 attgttgcaccatcagg 421  Q
    |||||||||||||||||    
T  48675462 attgttgcaccatcagg 48675446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 47903751 - 47903568
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | |||||||  |||   |||||||| |||||||||||| ||||||||||||||| ||| ||||||    
T  47903751 cacttggttcggatgaattcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatctcagcaaccgaaccaaaacaacccaaac 47903652  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||     |||||||||||||||               ||| || ||||||||||| |||||||| ||| ||| |||||||||||| ||||||||||||||    
T  47903651 ca-----caagaataatgaata---------------ctagccaaattacatagctcaagaatactatttttcgattcgattttttcattgttgcaccat 47903572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 36509086 - 36509024
Alignment:
Q  315 aaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaag 377  Q
    |||||||||||||||||||| |||||||||||||  ||||| | |||||||||||||||||||    
T  36509086 aaccaaaccgcaagaataatcaatattacttaaatttgtacgagcccaattacatagcccaag 36509024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 3211809 - 3211857
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  3211809 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 3211857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 10672235 - 10672187
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  10672235 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 10672187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 47070084 - 47070036
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  47070084 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 47070036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 47204124 - 47204172
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  47204124 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 47204172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 1335932 - 1335889
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg 266  Q
    ||||||||| | |||||||||||||||||||||| |||||||||    
T  1335932 cacttggtttggatgaattcagatgacttttgcactaaaccgcg 1335889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 8768333 - 8768376
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaacc 313  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  8768333 ttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaacc 8768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 11206045 - 11206083
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaacc 308  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  11206045 ttcggtttgcggtttgcatctcagcaaccgaaccaaacc 11206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 37376280 - 37376226
Alignment:
Q  273 ggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaa 327  Q
    ||||| |||||| ||| | | ||||||||||||||||||||||||||||| ||||    
T  37376280 ggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccaaacagcaa 37376226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 12118070 - 12117968
Alignment:
Q  221 cacacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaa 315  Q
    ||||||||||||| |||| ||| ||||||||||  | | |||||||  |||   |||||||| || ||||||||| ||||||| ||||||||||||| ||    
T  12118070 cacacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaa 12117971  T
Q  316 acc 318  Q
    |||    
T  12117970 acc 12117968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 226 - 419
Target Start/End: Original strand, 69089 - 69282
Alignment:
Q  226 ttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaa 320  Q
    |||||| | |||||||| ||||||||||||||| |||||||  |||   || ||||| |||||||||||| ||||||||||||     |||||||| |||    
T  69089 ttggtttggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaaacaa 69183  T
Q  321 accgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
     |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  69184 cccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctcttttgattcgatttttccattgttgcaccatca 69282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 226 - 419
Target Start/End: Original strand, 77195 - 77388
Alignment:
Q  226 ttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaa 320  Q
    |||||| | |||||||| ||||||||||||||| |||||||  |||   || ||||| |||||||||||| ||||||||||||     |||||||| |||    
T  77195 ttggtttggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaaacaa 77289  T
Q  321 accgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
     |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  77290 cccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatcacttttgattcgatttttccattgttgcaccatca 77388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 224 - 421
Target Start/End: Original strand, 39256187 - 39256384
Alignment:
Q  224 acttggttcgaatgaattcagatgacttttgcaataaac--cgcggttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||||| |||||||  ||||||||||||| | |||  ||||||||   ||||||| |||||||||||| ||||||||||||     ||||||||||    
T  39256187 acttggttcggatgaatttggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaacc 39256281  T
Q  319 aaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatc 418  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||| | ||| ||||||||||||||||||||||||||||    
T  39256282 aaaccgcaagaataatgaatattacttaaacatgtactagccaaattacatagctcacgaataatctttttcgattcgatttttccattgttgcaccatc 39256381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 16529042 - 16529240
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggttta-----cggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| |||| |||||||| | ||| |||   |||||||||     |||||||||||| |||||||     ||||||||||||||    
T  16529042 cacttggttcgtatgaattcggatggcttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaacc-----aaaccaaaccaaac 16529136  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  16529137 caaaccgcaagaatagtgaatattacttaaacatgtaatagcccaattacatagcccaagaataatctcttttgattcgaatttttcattgttgcaccat 16529236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 24910604 - 24910802
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | ||||| |  |||   ||| ||||  ||||||||||| ||||||||||||     |||||||||    
T  24910604 cacttggttcggatgaattcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaacc-----aaaccaaac 24910698  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||    
T  24910699 caaaccggaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttcaattgttgcaccat 24910798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 33910407 - 33910525
Alignment:
Q  303 caaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgattttt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |  ||||||||| ||||||||||||||||||    
T  33910407 caaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaatatgtactagcccaattacataacttaagaataatctcttttgattcgattttt 33910506  T
Q  403 ccattgttgcaccatcagg 421  Q
    ||| |||||||||||||||    
T  33910507 ccaatgttgcaccatcagg 33910525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 51252058 - 51252167
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||||||||||||||||||    
T  51252058 aaccaaaccaacccgcaagaataatgaatattacttaaacatgtactagcctaattacatagccaaataataatctcttttgattcgatttttccattgt 51252157  T
Q  410 tgcaccatca 419  Q
    ||||||||||    
T  51252158 tgcaccatca 51252167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 279 - 419
Target Start/End: Complemental strand, 11899510 - 11899375
Alignment:
Q  279 cggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaaga 378  Q
    |||||||||||| |||||||||| ||||||||||||     ||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||    
T  11899510 cggtttgcatctcagcaaccgaatcaaaccaaacca-----aaccgcaagaataatgaatattacttaaatatgtactagctcaattacatagctcaaga 11899416  T
Q  379 ataatatcttttgattcgatttttccattgttgcaccatca 419  Q
    ||||| | |||||||| ||||||||||||||||||||||||    
T  11899415 ataatcttttttgatttgatttttccattgttgcaccatca 11899375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 32954529 - 32954413
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||| ||||||||||||||    
T  32954529 aaccgaaccaaaccaaaccataagaataatgaatattacttaaacatgtacaagcccaattacatagctcaagaataatttctttcgattcgatttttcc 32954430  T
Q  405 attgttgcaccatcagg 421  Q
    |||||||||||||||||    
T  32954429 attgttgcaccatcagg 32954413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 33474896 - 33474775
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||| ||||    
T  33474896 aaccgaaccaaaccaaaccaaactgcaagaataacgaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgatttgatt 33474797  T
Q  400 tttccattgttgcaccatcagg 421  Q
    ||| |||||||||  |||||||    
T  33474796 ttttcattgttgcgtcatcagg 33474775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 44918981 - 44918877
Alignment:
Q  315 aaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcac 414  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| | |||||||| ||||||||||||||||| |    
T  44918981 aaccagaccgcaagaataatgaatattacttaaacatgtactagtccaattacatagctcaagaataatcttttttgatttgatttttccattgttgctc 44918882  T
Q  415 catca 419  Q
    |||||    
T  44918881 catca 44918877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 223 - 417
Target Start/End: Complemental strand, 45692323 - 45692134
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||  ||||||||||||| | ||||||  ||||   |||||||| |||||||||||| ||||||||||||||| ||||||        
T  45692323 cacttggttcggatgaatttggatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaacaaacc---- 45692228  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
          ||||||||||| ||||||||||||| ||||||||  ||||||||||| | |||||||||| ||||||||||| |||||| ||||||||||||||    
T  45692227 ------gcaagaataataaatattacttaaatatgtactagtccaattacataactcaagaataatctcttttgattcaattttttcattgttgcaccat 45692134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 6722450 - 6722527
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataat 383  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  6722450 aaccgaaccaaaccaaaccgcaaga-taatgaatattacttaaacatgtactgacccaattacatagctcaagaataat 6722527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 29707697 - 29707792
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    ||||||||||| |||| ||| ||||||||||  | | ||||||    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  29707697 cacttggttcggatgagttcggatgacttttagactgaaccgcacggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 29707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 5155000 - 5155048
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  5155000 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 5155048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 8211696 - 8211648
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  8211696 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 8211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 29389413 - 29389366
Alignment:
Q  374 caagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  29389413 caagaataatctcttttaattcgatttttccattgttgcaccatcagg 29389366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 1160584 - 1160699
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgc--ggtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||  |||||||||||||||||||||| | ||||||  | ||   |||| ||| ||||| |||||| ||||||||||||     |||||||||    
T  1160584 cacttggttcagatgaattcagatgacttttgcactgaaccgcacgattcggttcgatttgcggtt-gcatctcagcaaccgaacc-----aaaccaaac 1160677  T
Q  318 caaaccgcaagaataatgaata 339  Q
    ||||||||||||||||||||||    
T  1160678 caaaccgcaagaataatgaata 1160699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 1160698 - 1160766
Alignment:
Q  353 tactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    ||||| || ||||||||||| |||||||||| | ||| ||||| ||||||||||||||||| |||||||    
T  1160698 tactagccaaattacatagctcaagaataatctttttcgattcaatttttccattgttgcaacatcagg 1160766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 8165127 - 8165160
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgcaa 327  Q
    ||||||||||||||||||||||||||||||||||    
T  8165127 caaccgaaccaaaccaaaccaaaccaaaccgcaa 8165160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 17652222 - 17652189
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgcaa 327  Q
    ||||||||||||||||||||||||||||||||||    
T  17652222 caaccgaaccaaaccaaaccaaaccaaaccgcaa 17652189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 20494140 - 20494103
Alignment:
Q  281 gtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20494140 gtttgcatctcagcaaccgaaccaaaccaaaccaaacc 20494103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 51251984 - 51252024
Alignment:
Q  226 ttggttcgaatgaattcagatgacttttgcaataaaccgcg 266  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  51251984 ttggttcggatgaattcggatgacttttgcaatgaaccgcg 51252024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 226 - 413
Target Start/End: Original strand, 6200490 - 6200677
Alignment:
Q  226 ttggttcgaatgaattcagatgacttttgcaataaaccg--cggttt---tcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaa 320  Q
    |||||||| |||||||| ||||||||||||| | || ||  ||||||   |||||||  ||||||||||| |||||||     |||||||||||||||||    
T  6200490 ttggttcggatgaattcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttgcatcttagcaacc-----aaaccaaaccaaaccaa 6200584  T
Q  321 accgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgca 413  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6200585 accgcaagaataatgaatattactgaaacatgtactagcccaattacataacccaagaataatctcttttgattcgatttttccattgttgca 6200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 270 - 421
Target Start/End: Original strand, 36827395 - 36827541
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacat 369  Q
    |||||||| |||||||||||| |||| |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36827395 ttcggtttgcggtttgcatctcagcagccgaacc-----aaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacat 36827489  T
Q  370 agcccaagaataatatcttttgattcgatttttccattgttgcaccatcagg 421  Q
    ||| ||||| |||| ||||| ||||| |||||||||||||||||||||||||    
T  36827490 agctcaagattaatctctttcgattcaatttttccattgttgcaccatcagg 36827541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 300 - 414
Target Start/End: Complemental strand, 30392534 - 30392420
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  30392534 aaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagcccaacaataatctcttttgattcgatt 30392435  T
Q  400 tttccattgttgcac 414  Q
    ||||||||| |||||    
T  30392434 tttccattgctgcac 30392420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 14549755 - 14549562
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaac 317  Q
    ||||||||||| |||||||| ||||||||||||| | |||||||  |||   |||||||| |||||||||||| |||| |||||||||||||||||        
T  14549755 cacttggttcggatgaattcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaaccaaaccaaacc---- 14549660  T
Q  318 caaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 417  Q
          | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||    
T  14549659 ------gtaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgattcgaattttccattgttgtaccat 14549566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 3682368 - 3682252
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||| ||||||||||| ||||||||    
T  3682368 aaccgaaccaaaccaaaccgcaagaataatgaatattacctaaacatgtactagcccaattacataacctaagaataatctcttttgattcaatttttcc 3682269  T
Q  405 attgttgcaccatcagg 421  Q
    ||| || ||||||||||    
T  3682268 atttttccaccatcagg 3682252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 223 - 419
Target Start/End: Complemental strand, 33069119 - 33068928
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaac 322  Q
    ||||||||| | |||| ||| ||||||||||||| | |||| ||   || | ||| |||||||||||| |||||||||||||||| |||||||||||       
T  33069119 cacttggtttggatgatttcggatgacttttgcactgaaccacgcggtttgatttgcggtttgcatcttagcaaccgaaccaaacgaaaccaaacca--- 33069023  T
Q  323 cgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
      ||| |||||| |||||||||||||  ||||| | |||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||    
T  33069022 --caaaaataatcaatattacttaaatttgtaccagcccaattacataactcaagaataatctcttttgatttgatttttccattgttgcaccatca 33068928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 18169664 - 18169775
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| ||| | ||||||||||||||||| |    
T  18169664 aaccaaatcaaactgcaagaataatgaatattacttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattat 18169763  T
Q  410 tgcaccatcagg 421  Q
    ||||||||||||    
T  18169764 tgcaccatcagg 18169775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 18633230 - 18633341
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgt 409  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| ||| | ||||||||||||||||| |    
T  18633230 aaccaaatcaaactgcaagaataatgaatattacttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattat 18633329  T
Q  410 tgcaccatcagg 421  Q
    ||||||||||||    
T  18633330 tgcaccatcagg 18633341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 10661603 - 10661484
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||||||| |||||||||||||||||||| |||||||||||  ||||||||||||||| ||| |||||||||| ||||||| || | |||||||||||||    
T  10661603 aaccaaactaaaccaaaccaaaccgcaaggataatgaatatatcttaaacatgtactagcccgattacatagctcaagaattatcttttttgattcgatt 10661504  T
Q  400 tttccattgttgcaccatca 419  Q
    ||| |||||||| |||||||    
T  10661503 ttttcattgttgtaccatca 10661484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 44673255 - 44673109
Alignment:
Q  224 acttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||||| |||||||| ||||||||||||| | |||||||  |||   || ||||| |||||||||||| ||||||||||||||||||||||||||     
T  44673255 acttggttcggatgaattcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaact 44673156  T
Q  319 aaaccgcaagaataatgaatattacttaaacatgtactaacccaattacata 370  Q
         |||||||||||||||||||||||||||||||||| ||||||||||||    
T  44673155 -----gcaagaataatgaatattacttaaacatgtactagcccaattacata 44673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 3006188 - 3006297
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcggttttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaaac 322  Q
    ||||||||||| |||| ||| ||| ||||||  | | |||||||   |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  3006188 cacttggttcggatgagttcggattacttttagactgaaccgcgcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccaaac 3006287  T
Q  323 cgcaagaata 332  Q
    ||||| ||||    
T  3006288 cgcaaaaata 3006297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 421
Target Start/End: Original strand, 36909976 - 36910081
Alignment:
Q  305 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttcc 404  Q
    |||| ||||| |||||||||||||||||||||||||         |||||||| ||||||||||| || |||||||||| | ||||||||| ||||||||    
T  36909976 aaccgaaccataccaaaccgcaagaataatgaatat---------atgtactagcccaattacat-gctcaagaataatct-ttttgattccatttttcc 36910064  T
Q  405 attgttgcaccatcagg 421  Q
    |||||||||||||||||    
T  36910065 attgttgcaccatcagg 36910081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 5802507 - 5802602
Alignment:
Q  223 cacttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaacc 313  Q
    ||||||||||| |||| ||||||||||||||  | | |||||||  |||   |||||||| |||||||||||| ||||||| ||||||||||||||    
T  5802507 cacttggttcggatgagttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaaccaaacc 5802602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 31497645 - 31497676
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgc 325  Q
    ||||||||||||||||||||||||||||||||    
T  31497645 caaccgaaccaaaccaaaccaaaccaaaccgc 31497676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 42496533 - 42496565
Alignment:
Q  310 aaccaaaccaaaccgcaagaataatgaatatta 342  Q
    ||||||| |||||||||||||||||||||||||    
T  42496533 aaccaaatcaaaccgcaagaataatgaatatta 42496565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 226 - 419
Target Start/End: Complemental strand, 106564 - 106371
Alignment:
Q  226 ttggttcgaatgaattcagatgacttttgcaataaaccgcg--gtt---ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaaccaa 320  Q
    |||||||| |||||||| ||||||||||||||| |||||||  |||   || ||||| |||||||||||| | ||||||||||||||| |||||| ||      
T  106564 ttggttcggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaaccc-- 106467  T
Q  321 accgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatca 419  Q
       |||||||||||||||||||||||||||||||||| || |||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||    
T  106466 ---gcaagaataatgaatattacttaaacatgtactagcctaattacatagcctaataataatttctttttattcgatttttccattgttgcaccatca 106371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 302 - 419
Target Start/End: Complemental strand, 129095 - 128978
Alignment:
Q  302 ccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttt 401  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||  ||||||||||    
T  129095 ccaaaccaaaccaaaccaacccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctctttatattcgatttt 128996  T
Q  402 tccattgttgcaccatca 419  Q
    ||||||||||||||||||    
T  128995 tccattgttgcaccatca 128978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 47398 - 47519
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||    
T  47398 aaccgaaccaaaccaaaccaaaccacaagaataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcgatt 47497  T
Q  400 tttccattgttgcaccatcagg 421  Q
    | |||||||||||| |||||||    
T  47498 tgtccattgttgcaacatcagg 47519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 40202 - 40323
Alignment:
Q  300 aaccaaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatt 399  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||| |||    
T  40202 aaccgaaccaaaccaaaccaaaccacaagaataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcaatt 40301  T
Q  400 tttccattgttgcaccatcagg 421  Q
    | |||||||||||| |||||||    
T  40302 tgtccattgttgcaacatcagg 40323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 40621 - 40653
Alignment:
Q  294 caaccgaaccaaaccaaaccaaaccaaaccgca 326  Q
    |||||||||||||||||||||||||||||||||    
T  40621 caaccgaaccaaaccaaaccaaaccaaaccgca 40653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 5520 - 5568
Alignment:
Q  270 ttcggtttacggtttgcatctgagcaaccgaaccaaaccaaaccaaacc 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  5520 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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