View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20945_low_12 (Length: 214)
Name: NF20945_low_12
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 44604271 - 44604154
Alignment:
| Q |
19 |
tccctaacaagctttgtcactttcttcccaactcctttggtcttggaatcattttccgttggtttacttgtctcggcagtttcaattaccggtgtacttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604271 |
tccctaacaagctttgtcactttcttcccaactcctttggtcttggaatcattttccgttggtttacttgtctcggcagtttcaattaccggtgtacttc |
44604172 |
T |
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| Q |
119 |
ccgcagctgcagcagctg |
136 |
Q |
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|||| ||||||||||||| |
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| T |
44604171 |
ccgcggctgcagcagctg |
44604154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 5731819 - 5731703
Alignment:
| Q |
19 |
tccctaacaagctttgtcactttcttcccaactcctttggtcttggaatcattttccgttggtttacttgtctcggcagtttcaattaccggtgtacttc |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
5731819 |
tccctaacaagatttgtcactttcttcccaactcctttggtcttggaatcattttccgttggtttacttgtctcgacagtttcaattaccagtgtacttc |
5731720 |
T |
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| Q |
119 |
ccgcagctgcagcagct |
135 |
Q |
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|||| ||| |||||||| |
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| T |
5731719 |
ccgcggctacagcagct |
5731703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 9468567 - 9468450
Alignment:
| Q |
19 |
tccctaacaagctttgtcactttcttcccaactcctttggtcttggaatcattttccgttggtttacttgtctcggcagtttcaattaccggtgtacttc |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9468567 |
tccctaacaagctttttcactttcttcccaactcctttggtcttggaatcattttccgttggtttacttgtctcggcagtttcaattaccggtgtacttc |
9468468 |
T |
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| Q |
119 |
ccgcagctgcagcagctg |
136 |
Q |
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|| | || |||||||||| |
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| T |
9468467 |
ccacggcagcagcagctg |
9468450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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