View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20945_low_2 (Length: 521)
Name: NF20945_low_2
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_low_2 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 5885350 - 5885858
Alignment:
| Q |
19 |
tctcatgcaacacaatgaattgttgtcgatcccaagcatctccaccgcatgctccatcgatcttcattg-----------------attttaattttggg |
101 |
Q |
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| T |
5885350 |
tctcatgcaacacaatgaactgttgttgatcccaagcatctccaccgcatgctccatcgatcttcattgcttccggctcttgattgattttaattttggg |
5885449 |
T |
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| Q |
102 |
aggaaaagaaaagcgcgagaaaatttgaagtgatacacgaagaatattgtatacgcacacacaatgatactatgtaaggatccatgtttgctcatagtag |
201 |
Q |
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| T |
5885450 |
aggaaaagaaaagcgcgagaaaatttgaagtggtacacgaagaaaattgtatacgcactcacaatgatactatgtaaggatccatgtttgctcatagtag |
5885549 |
T |
|
| Q |
202 |
atatttgattgatcctatagtagtatccatgattaaaaacaaaaagatttaaacaagaacctaattcatatataactaattatttgatcattttaatcgt |
301 |
Q |
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| T |
5885550 |
atatttgattgatcctatagtagtatccatgagtaaaaacaaaaagatttaaacaagaacctgattcatatataactaattatt-gatcattttaatcgt |
5885648 |
T |
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| Q |
302 |
ttctatatctttgttcggcatctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagc |
401 |
Q |
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| T |
5885649 |
ttctatatctttattcggcatcgttcaccattttgaagacagtatcagcccgctcagcaatgtttggtactttataattctaagcgacgtaaactccggc |
5885748 |
T |
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| Q |
402 |
aacagttcctgctttaaaagaaaagcaattattgattataccaattggaatttctctttaggtgttcacttgcattttgtacatgttgtttttactgaat |
501 |
Q |
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| T |
5885749 |
aacagttcctgctttaaaagaaaagcaattattgattacaccaattggaatttctctttaggtgttctcttgcattttgtacatgttgtttttactgagt |
5885848 |
T |
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| Q |
502 |
ttatcctttg |
511 |
Q |
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| T |
5885849 |
ttatcctttg |
5885858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 320 - 448
Target Start/End: Complemental strand, 45373382 - 45373254
Alignment:
| Q |
320 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaa |
419 |
Q |
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| T |
45373382 |
catctttgaccattttgaagacggtatcagccctctcagcaatgttaggtagtttataattttgagcaacgtaaacaccggcaacagttccagctacaaa |
45373283 |
T |
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| Q |
420 |
agaaaagcaattattgattataccaattg |
448 |
Q |
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| T |
45373282 |
agagaagcaattcttgattataccaattg |
45373254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 443
Target Start/End: Complemental strand, 45370079 - 45369973
Alignment:
| Q |
337 |
aagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaaagaaaagcaattattga |
436 |
Q |
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|||| ||||||||| ||| |||||||| |||||||||||| |||| |||||||||||| || | ||||||||||||| ||||||| |||||| |||| |
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| T |
45370079 |
aagaaagtatcagcgagcttagcaatgtcaggtactttatagttctgagcgacgtaaacaccggtaacagttcctgctataaaagagaagcaacccttga |
45369980 |
T |
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| Q |
437 |
ttatacc |
443 |
Q |
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| T |
45369979 |
ttatacc |
45369973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 403
Target Start/End: Complemental strand, 96341 - 96258
Alignment:
| Q |
320 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaa |
403 |
Q |
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||||||| |||||||| ||||| |||||||||| ||||||||||||||| | ||||||||| | ||| ||||||||||| |||| |
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| T |
96341 |
catctttgaccattttcaagacggtatcagccctctcagcaatgttaggcagtttataattttgagcaacgtaaactccggcaa |
96258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 403
Target Start/End: Complemental strand, 9093378 - 9093295
Alignment:
| Q |
320 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaa |
403 |
Q |
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||||||| |||||||| ||||| |||||||||| |||||||||||||| | ||||||||| | ||||||||||||||| |||| |
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| T |
9093378 |
catctttgaccattttcaagacggtatcagccctctcagcaatgttagacagtttataattttgagcgacgtaaactccggcaa |
9093295 |
T |
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