View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20945_low_3 (Length: 478)
Name: NF20945_low_3
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 46308032 - 46307582
Alignment:
| Q |
18 |
ccaacagcaatcctcatccgtgtttcccaatcaagttttaccttcagtggacctgtgtcaaagaaggcatttttaagcacccaaaagcagctttgcggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46308032 |
ccaacagcaatcctcatccgtgtttcccaatcaagttttaccttcagtggacctgtgtcaaagaaggcatttttaagcacccaaaagcagctttgcggag |
46307933 |
T |
|
| Q |
118 |
atataacaaatctaaactccagaaatacataaaacttttcttgcaagtagcaccaaaatcctgcatcaaattaatacagaaatttgtttcagttgggaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46307932 |
atataacaaatctaaactccagaaatacataaaacttttcttgcaagtagcaccaaaatcctgcatcaaattaatacagaaatttgtttcagttgggaaa |
46307833 |
T |
|
| Q |
218 |
acttaccatgtagaagatcccagagcgagccatttgccatgtactcataaaaaaggagatttccataaggagtaagtgcatagccatgcaatgtgacaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46307832 |
acttaccatgtagaagatcccagagcgagccatttgccatgtactcataaaaaaggagatttccaaaaggagtaagtgcatagccatgcaatgtgacaag |
46307733 |
T |
|
| Q |
318 |
atttctatgtctaatgctgccaattgtttcaagctccgtttcaaattctcttaaattgtgaggatgctgattgtacaatcgcttgactgcaatgggtcgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46307732 |
atttctatgtctaatgctgccaattgtttcaagctccgtttcaaattctcttaaattgtgaggatgctgattgtacaatcgcttgactgcaatcggtcgg |
46307633 |
T |
|
| Q |
418 |
gaatttttcaacacacacttgtacacagtactagaggcaccataccctatg |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46307632 |
gaatttttcaacacacacttgtacacagtactagaggcaccataccctatg |
46307582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University