View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20945_low_4 (Length: 438)
Name: NF20945_low_4
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 24480287 - 24480543
Alignment:
| Q |
5 |
aactaaaatgat-cttttgtaatgtaatttaatccaagtcttttgatgttatacttaggttctctctttgatttgacataacttagcaccaaatttatct |
103 |
Q |
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| T |
24480287 |
aactaaaatgattcttttgtaatgtaatttaatccaagtcttttgatgttatacttaggttctctctttgatttgacataacttagcaccaaatttatct |
24480386 |
T |
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| Q |
104 |
tgtatttgcattgttctttcaatatagttttcttgtttttatttcttgcattgtctttatgttatttaatcaaactcgtccttatgatgagtgagtagnn |
203 |
Q |
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| T |
24480387 |
tgtatttgcattgttctttcaatatagttttcttgtttttatttcttgcattgtctttatgttatttaattaaactcgtccttatgatgagtgagtagtt |
24480486 |
T |
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| Q |
204 |
nnnnnaagttttgggattatgaaaagtaattttatgataaacttttcataatccttg |
260 |
Q |
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| T |
24480487 |
tttttaagttttgggattatgaaaagtaattttatgataaacttttcataatccttg |
24480543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 314 - 430
Target Start/End: Original strand, 24480596 - 24480712
Alignment:
| Q |
314 |
gtcatgttcgtgtcatctcaccgtttaaactaagttagtctctgttgtttgaattggatgatctatttannnnnnngaactgaacgactcaagttccata |
413 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
24480596 |
gtcatgttcgtgtcatctcaccgtttaaaccaagttagtctctgttgtttgaattggacgatctatttatttgtttgaactgaacgactcaagttccata |
24480695 |
T |
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| Q |
414 |
ttgttttttgatgatgt |
430 |
Q |
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| T |
24480696 |
ttgtttttctatgatgt |
24480712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 2497433 - 2497372
Alignment:
| Q |
128 |
tagttttcttgtttttatttcttgcattgtctttatgttatttaatcaaactcgtccttatg |
189 |
Q |
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||||||||||||||||| || ||||||| ||||||| ||||||| | || ||||||||||| |
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| T |
2497433 |
tagttttcttgtttttactttttgcattctctttattttatttagttaagttcgtccttatg |
2497372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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