View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20945_low_5 (Length: 370)
Name: NF20945_low_5
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 24479925 - 24480264
Alignment:
| Q |
19 |
agcataaatatggtcactaatgacagtggacatcaataattatttnnnnnnntaaattaattaaatgtaattatatacgtcagtttttattatatcagac |
118 |
Q |
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| T |
24479925 |
agcataaatatggtcactaatgacagtggacatcaataatcatttaaaaaaataaataaattaaatgtaattatatacgtcagtttttattatatcagac |
24480024 |
T |
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| Q |
119 |
actgaacacatcttgaatgaagcaatgttgcaaaccatacatgacataaggcgcttaaatgttaatcaaaaccattttcaatgatcaacgatagggatat |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24480025 |
accgaacacatcttgaatgaagcaatgttgcaaaccatacatgacataaggcgcttaaatgttaatcaaaaccattttcaatgatcaacgatagggatat |
24480124 |
T |
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| Q |
219 |
tattacttaacacctctttagaaatcattcaatcaacttccaaagcgtaatg-----gtcatgtaatcaagtcagaggttgttacggtcacccttaatga |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24480125 |
tattactcaacacctctttagaaatcattcaatcaacttccaaagcgtaatggtcatgtcatgtaatcaagtcagaggttgttacggtcacccgtaatga |
24480224 |
T |
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| Q |
314 |
ggggctacgacaaaatgagctgcataactctatgattatt |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24480225 |
ggggctacgacaaaatgagctgcataactctatgattatt |
24480264 |
T |
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