View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20945_low_7 (Length: 345)
Name: NF20945_low_7
Description: NF20945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20945_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 79 - 330
Target Start/End: Complemental strand, 1687752 - 1687501
Alignment:
| Q |
79 |
ttcacaattaatcagatttgtcaattgtctattaatgggtcatgctaaaacaaaagatggtttccttttaatttgaacataaattaaatatctcaactaa |
178 |
Q |
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| T |
1687752 |
ttcacaattaatcagatttgtcaattgcctattaatgggtcatgctaaaacaaaagatggtttccttttaatttgaacataaattaaatatctcaactaa |
1687653 |
T |
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| Q |
179 |
tggaaacttcccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagc |
278 |
Q |
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| T |
1687652 |
tggaaacttcccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagc |
1687553 |
T |
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| Q |
279 |
ttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatct |
330 |
Q |
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| T |
1687552 |
ttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatct |
1687501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1687825 - 1687775
Alignment:
| Q |
19 |
atgtatagcatacaatgtcgaaatacaagactccaaaattaaggctggtct |
69 |
Q |
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| T |
1687825 |
atgtataacatacaatgtcgaaatacaagactccaaaattaaggctggtct |
1687775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 41918726 - 41918623
Alignment:
| Q |
226 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
325 |
Q |
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| T |
41918726 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
41918627 |
T |
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| Q |
326 |
catc |
329 |
Q |
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|||| |
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| T |
41918626 |
catc |
41918623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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