View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_high_11 (Length: 476)
Name: NF20946_high_11
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 33480307 - 33479861
Alignment:
| Q |
16 |
gtgtgtggggtttggtatgtaaaagaaaccgttggatagaaaattttgggtcctttggcgtacgaaccattgaaaaaaggctacccagaacaactccaat |
115 |
Q |
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| T |
33480307 |
gtgtgtggggtttggtatgtaaaagaaaccgttggatagaaaattttgggtcctttggcgtacgaaccattgaaaaaaggctacccaaaacaactccaat |
33480208 |
T |
|
| Q |
116 |
caatattacaaccgctatgaagaaaatcaacacaaaacaccaacaacacatccgacttttctcctttggtggagagcttcgacgttgctcagcaaggcgc |
215 |
Q |
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| T |
33480207 |
caatattacaaccgctatgaagaaaatcaacacaaaacaccaacaacacatccgatttttctcctttggtggagagcttcgacgttgctcagcaaggcgc |
33480108 |
T |
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| Q |
216 |
gcattttcaggtggtggaacgcggtagatttggtccttagggacttggacaacgaaggtgttgcggttaatgttaggtaattgaggtttagaattagaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33480107 |
gcattttcaggtggtggaacgcggtagatttggtccttagggacttggacaacgaaggtgttgcggttaatgttaggtaattgaggtttagaattagaat |
33480008 |
T |
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| Q |
316 |
catgcggag---gaggtggtggcggtgaggcccgctcctccatgggagtatggggagcggtgggtgaggatagggtagaaagtagtgattttgaattgaa |
412 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | |
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| T |
33480007 |
catgcggaggaggaggtggtggcggtgaggcccgctcctccatgggagtatggggagcggcgggtgaggatagggtagaaagtgttgattttgaattgga |
33479908 |
T |
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| Q |
413 |
ggggtggtattagaaaagaagagagggagtagtttgcatgggaaatg |
459 |
Q |
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| T |
33479907 |
ggggtggtattagaaaagaagagagggcgtagtttgcatgggaaatg |
33479861 |
T |
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