View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20946_high_26 (Length: 276)
Name: NF20946_high_26
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 38864849 - 38865097
Alignment:
| Q |
18 |
cgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38864849 |
cgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
38864948 |
T |
|
| Q |
118 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38864949 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctga |
38865048 |
T |
|
| Q |
218 |
atagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38865049 |
atagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
38865097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 38840786 - 38841029
Alignment:
| Q |
22 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
121 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38840786 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38840885 |
T |
|
| Q |
122 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||||| |||| ||| ||| |
|
|
| T |
38840886 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtag |
38840985 |
T |
|
| Q |
222 |
ctcactgtggggaatgttttgagagctttcttcttgattccttt |
265 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
38840986 |
ctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38841029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 38858524 - 38858767
Alignment:
| Q |
22 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
121 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38858524 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38858623 |
T |
|
| Q |
122 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||||| |||| ||| ||| |
|
|
| T |
38858624 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtag |
38858723 |
T |
|
| Q |
222 |
ctcactgtggggaatgttttgagagctttcttcttgattccttt |
265 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
38858724 |
ctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38858767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 38851118 - 38850874
Alignment:
| Q |
22 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
121 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38851118 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38851019 |
T |
|
| Q |
122 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | |||||| |
|
|
| T |
38851018 |
gcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatag |
38850919 |
T |
|
| Q |
222 |
ctcactgtggggaatgttttgagagctttcttcttgattcctttg |
266 |
Q |
| |
|
|||| ||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
38850918 |
ctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38850874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 38861398 - 38861642
Alignment:
| Q |
22 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
121 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38861398 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38861497 |
T |
|
| Q |
122 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | |||||| |
|
|
| T |
38861498 |
gcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatag |
38861597 |
T |
|
| Q |
222 |
ctcactgtggggaatgttttgagagctttcttcttgattcctttg |
266 |
Q |
| |
|
|||| ||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
38861598 |
ctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38861642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 38846604 - 38846850
Alignment:
| Q |
20 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
119 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38846604 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38846703 |
T |
|
| Q |
120 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
38846704 |
ttgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagtttcaactcagttgaat |
38846803 |
T |
|
| Q |
220 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttg |
266 |
Q |
| |
|
| || ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38846804 |
aacttactgttgggaatgtcttgagagctttcttcttgattcctttg |
38846850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 38826996 - 38827242
Alignment:
| Q |
20 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
119 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38826996 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38827095 |
T |
|
| Q |
120 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||||||||||||| |||| ||||| ||||||| ||||| |
|
|
| T |
38827096 |
ttgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttttaactcagttgaat |
38827195 |
T |
|
| Q |
220 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttg |
266 |
Q |
| |
|
| || ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38827196 |
aacttactgttggaaatgtcttgagagctttcttcttgattcctttg |
38827242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 262
Target Start/End: Original strand, 43666059 - 43666239
Alignment:
| Q |
82 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataataca |
181 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | ||| |
|
|
| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacaca |
43666158 |
T |
|
| Q |
182 |
ctctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
262 |
Q |
| |
|
||| | |||||||| || | ||||| |||| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
43666159 |
ctccgagtccaaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University