View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_high_27 (Length: 264)
Name: NF20946_high_27
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_high_27 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 5666899 - 5667087
Alignment:
| Q |
76 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccctacgaggttgtctcacttgtgttctaaaaacaaggattnnnnnnntctcaagtct |
175 |
Q |
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| T |
5666899 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccctacgaggttgtctcacttgtgttctaaaaacaaggattaaaaaaatctcaagtct |
5666998 |
T |
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| Q |
176 |
agttaactcatttagaaatattttatagattaatttgttataaaaatgagttcaagaactatgatgttgtcaacttatgttctaaaaac |
264 |
Q |
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| T |
5666999 |
agttaactcatttagaaatattttatagattaatttgttataaaaatgagttcaagaactatgatgttgtcaacttatattctaaaaac |
5667087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 5666807 - 5666865
Alignment:
| Q |
15 |
gagagaagttgaaagggttagaaaggagagatagaacagaaattgataaggtgtgggag |
73 |
Q |
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| T |
5666807 |
gagagaagttgaaagggttagaaaggagagatagaacagaaattgataaggtgtgggag |
5666865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 5667134 - 5667183
Alignment:
| Q |
198 |
ttatagattaatttgttataaaaatgagttcaagaactatgatgttgtca |
247 |
Q |
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| T |
5667134 |
ttatagactaattttttacaaaattgagttcaagaactatgaagttgtca |
5667183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 12846771 - 12846827
Alignment:
| Q |
15 |
gagagaagttgaaagggttagaaaggagagatagaacagaaattgataaggtgtgggag |
73 |
Q |
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| T |
12846771 |
gagagaagttgaaggagttagaaagaagaga--gaacagaaattgataaggtgtgggag |
12846827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 44122706 - 44122664
Alignment:
| Q |
77 |
cacggtgggagatctattaagctctcctaccctagaaggcgcc |
119 |
Q |
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| T |
44122706 |
cacggtgggagacctattaagctctcccaccctagaaggcgcc |
44122664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 12846865 - 12846903
Alignment:
| Q |
81 |
gtgggagatctattaagctctcctaccctagaaggcgcc |
119 |
Q |
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| T |
12846865 |
gtgggagatctattaagctctcccaccatagaaggcgcc |
12846903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 3484758 - 3484800
Alignment:
| Q |
31 |
gttagaaaggagagatagaacagaaattgataaggtgtgggag |
73 |
Q |
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| T |
3484758 |
gttagaaaagagagagagaacagaaattgataaggtgtgggag |
3484800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 28225044 - 28225088
Alignment:
| Q |
76 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccc |
120 |
Q |
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| T |
28225044 |
tcacggtgagagacctattaagctctcccaccctagaaggcgccc |
28225088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 630255 - 630290
Alignment:
| Q |
192 |
aatattttatagattaatttgttataaaaatgagtt |
227 |
Q |
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| T |
630255 |
aatattttatagattaatttgttataaaaatcagtt |
630290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 32568154 - 32568194
Alignment:
| Q |
31 |
gttagaaaggagagatagaacagaaattgataaggtgtgggag |
73 |
Q |
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| T |
32568154 |
gttagaaaggagaga--gaacagaaattgataaggtgtgggag |
32568194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 32568228 - 32568273
Alignment:
| Q |
76 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccct |
121 |
Q |
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|||| |||||||| |||||||||||||| |||||||||| |||||| |
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| T |
32568228 |
tcacagtgggagacctattaagctctcccaccctagaagacgccct |
32568273 |
T |
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