View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20946_high_6 (Length: 568)
Name: NF20946_high_6
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_high_6 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Complemental strand, 46239998 - 46239442
Alignment:
| Q |
12 |
atcatcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239998 |
atcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatg |
46239899 |
T |
|
| Q |
112 |
atgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagttggccacccacctagaacaagcagatttgttttttgttttccttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46239898 |
atgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagttagccacccacctagaacaagcagatttgttttttgttttccttg |
46239799 |
T |
|
| Q |
212 |
cacaagtgtggtctctatccaaagactttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttctttgcaaattac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46239798 |
cacaagtgtggtctctatccaaagactttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttgtttgcaaattac |
46239699 |
T |
|
| Q |
312 |
ccttaccctaccaggttcattttttggcatctttatttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaac |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
46239698 |
ccttaccctaccaggttcattttttggcatctttatttcatgcccattcagcacattccactcaattattgcatccttgaattctctaagtgaattaaac |
46239599 |
T |
|
| Q |
412 |
tccatacctaacttaaactcatacttttcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239598 |
tccatacctaacttaaactcatacttttcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagc |
46239499 |
T |
|
| Q |
512 |
tatatagttcatcactatggtactcttctgcttcatcatcaactttattccctttat |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46239498 |
tatatagttcatcactatggtactcttctgcttcatcatcaactttattccctttat |
46239442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 23541392 - 23541225
Alignment:
| Q |
12 |
atcatcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatg |
111 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| ||||||||||| ||||| |||||||| | || |||||||||||||| || |||||||||||||||| |
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| T |
23541392 |
atcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctacccattgtaatacccactgcatggtttgtcctcatgtcatccaca |
23541293 |
T |
|
| Q |
112 |
atgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagttggccacccacct |
179 |
Q |
| |
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|| || || |||||||| || |||||||||||||| ||||||| ||| || ||||||||||| |
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| T |
23541292 |
atatctgagattgttaccttttttgaagtttgcagcttctttaccacagaaaaatttgccacccacct |
23541225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 346 - 452
Target Start/End: Complemental strand, 23541058 - 23540952
Alignment:
| Q |
346 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
445 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| ||| ||||||||||||| | |||||||||| || ||||||||||||||||| ||||| | | |||| | |
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| T |
23541058 |
atttcatatccattaagcacattccattcacgtattgcatccttgaattgtgtgagtgaattgaattccatacctaacttaaattcatattgtgcattaa |
23540959 |
T |
|
| Q |
446 |
attgctc |
452 |
Q |
| |
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||||||| |
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| T |
23540958 |
attgctc |
23540952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Original strand, 3437481 - 3438025
Alignment:
| Q |
12 |
atcatcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
3437481 |
atcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc------------cactgcatgattcgtcctcatgtcatcgatg |
3437568 |
T |
|
| Q |
112 |
atgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagttggccacccacctagaacaagcagatttgttttttgttttccttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3437569 |
atgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagttagccacccacctagaacaagcatatttgttttttgttttccttg |
3437668 |
T |
|
| Q |
212 |
cacaagtgtggtctctatccaaagactttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttctttgcaaattac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3437669 |
cacaagtgtggtctctatccaaagactttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttgtttgcaaattac |
3437768 |
T |
|
| Q |
312 |
ccttaccctaccaggttcattttttggcatctttatttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3437769 |
ccttaccctaccaggttcattttttggcatctttatttcatgcccattcaacacatttcactcaattattgcatccttgaattctctgagtgaattaaac |
3437868 |
T |
|
| Q |
412 |
tccatacctaacttaaactcatacttttcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437869 |
tccatacctaacttaaactcatacttttcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagc |
3437968 |
T |
|
| Q |
512 |
tatatagttcatcactatggtactcttctgcttcatcatcaactttattccctttat |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3437969 |
tatatagttcatcactatggtattcttctgcttcatcatcaactttcttccctttat |
3438025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 470
Target Start/End: Original strand, 34459402 - 34459526
Alignment:
| Q |
346 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
445 |
Q |
| |
|
||||||| |||||| || ||||||||||| || || ||||||||||| ||||| | ||||||||| | ||| |||||| |||||| ||| || | |||| |
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|
| T |
34459402 |
atttcatacccattaagtacattccactctatcattgcatccttgaactctcttaatgaattaaattacatgcctaacctaaactaatagttcttgttta |
34459501 |
T |
|
| Q |
446 |
attgctcctttctaaactttgcata |
470 |
Q |
| |
|
|||||||| ||||||||||| |||| |
|
|
| T |
34459502 |
attgctcccttctaaacttttcata |
34459526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 346 - 470
Target Start/End: Original strand, 4497985 - 4498109
Alignment:
| Q |
346 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
445 |
Q |
| |
|
||||||| |||||| || ||||||||||| || || ||||||||||| ||||| | ||||||||| |||||||||||| |||||||||| || | |||| |
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|
| T |
4497985 |
atttcatacccattaagtacattccactctatcattgcatccttgaactctcttaatgaattaaattccatacctaacctaaactcatagttcttgttta |
4498084 |
T |
|
| Q |
446 |
attgctcctttctaaactttgcata |
470 |
Q |
| |
|
|||||||| ||||||||||| |||| |
|
|
| T |
4498085 |
attgctcccttctaaacttttcata |
4498109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 4497619 - 4497797
Alignment:
| Q |
25 |
tcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatgg |
124 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| ||||| ||||| ||||| || | | | |||| || || |||||||| |||| ||||||||| | || | |
|
|
| T |
4497619 |
tcaacaatcttctgtgctatctgctttgccttccatgcccttccttttgtaagatctactgagtggttggtcctcatatcattcatgatgtctttgatag |
4497718 |
T |
|
| Q |
125 |
ttaccttcttatttgtttgcagcttcttaaccacagcaaagttggccacccacctagaacaagcagatttgttttttgt |
203 |
Q |
| |
|
| || |||| | ||||||| || || ||||| ||||||||||| || |||||| |||| |||||| |||||||||| |
|
|
| T |
4497719 |
tgactttctcagttgtttgaagtttgttaacaacagcaaagtttgcaacccacttagacttggcagatctgttttttgt |
4497797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 470
Target Start/End: Complemental strand, 17529 - 17405
Alignment:
| Q |
346 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
445 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||| | | |||||||| |||||||||||| |||||||||| | | || | |
|
|
| T |
17529 |
atttcatgaccattaagtacattccactctattattgcatctttgaactcttttaaagaattaaattccatacctaacataaactcatagtccttgttca |
17430 |
T |
|
| Q |
446 |
attgctcctttctaaactttgcata |
470 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
17429 |
attgttcctttctaaacttttcata |
17405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 470
Target Start/End: Original strand, 24676802 - 24676926
Alignment:
| Q |
346 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
445 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||| | | |||||||| |||||||||||| |||||||||| | | || | |
|
|
| T |
24676802 |
atttcatgaccattaagtacattccactctattattgcatctttgaactcttttaaagaattaaattccatacctaacataaactcatagtccttgttca |
24676901 |
T |
|
| Q |
446 |
attgctcctttctaaactttgcata |
470 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
24676902 |
attgttcctttctaaacttttcata |
24676926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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