View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20946_high_7 (Length: 554)
Name: NF20946_high_7
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 12 - 535
Target Start/End: Original strand, 37024094 - 37024606
Alignment:
| Q |
12 |
acagatttcagggaccgatcttaaggcccaacttaagatccaaaaatacccaagagcctctctaaattggagcttaccatagagaaagcccaaaaatgga |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37024094 |
acagatttcagggaccgatcttaatgcccaacttaagatccaaaaatacccaagagcctctctaaattggagcttaccatagagaaagcccaaaaatgga |
37024193 |
T |
|
| Q |
112 |
ttgtgcttgctgagtagaatatcaaacaaccctgaggcccatcttttctgttggatcatacttactatgttatcttgaggtgagcaacccataaaggcca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37024194 |
ttgtgcttgctgagtagaatatcaaacaaccctgaggcccatcttttctgttggatcatacttactatgttatcttgaggtgagcaacccataaaggcca |
37024293 |
T |
|
| Q |
212 |
atggatctggtgaacacatttcagatctccatcctcttgtatgaatgtccaacccagtaagtacatcctctgacgttgatccatatatccaacccaccta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37024294 |
atggatctggtgaacacatttcagatctccatcctcttgtatgaatgtccaacccagtaagtacatcctctgacgttgatccatatatccaacccaccta |
37024393 |
T |
|
| Q |
312 |
atattttcnnnnnnnnctagaagattatatgtttttacctaagttaatgcatattattacatcaaaaagttaatccatggtatgagcattttagatcatg |
411 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
37024394 |
atattttcaaaaaagactagaagattatatatttttacctaagttaatgcatattattacataaaaaagttaatccatagtatgagcattttagatc--- |
37024490 |
T |
|
| Q |
412 |
ttaaaatatcttatgaaaagcttacaaaacgtccataaattttgagagattatattgaagaaattaaataagacgtgcctttggatatattgtctatgtt |
511 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37024491 |
-------atcttatgaaaagcttac-aaacgtccatgaattttgagagattatattgaagaaattaaataagacgtgcctttggatatattgtctatgtt |
37024582 |
T |
|
| Q |
512 |
gcttacctgtttgccccaggcagt |
535 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37024583 |
gcttacctgtttgccccaggcagt |
37024606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 316
Target Start/End: Original strand, 37007411 - 37007547
Alignment:
| Q |
180 |
gttatcttgaggtgagcaacccataaaggccaatggatctggtgaacacatttcagatctccatcctcttgtatgaatgtccaacccagtaagtacatcc |
279 |
Q |
| |
|
||||||||| ||||| || |||||||| || | ||| ||||||||||| | ||||||||||||||| | || || | | | |||||| ||||||||| |
|
|
| T |
37007411 |
gttatcttgtggtgaacagcccataaaagctattgggtctggtgaacaaagctcagatctccatcctttcgtgtggaatttgagcccagttagtacatcc |
37007510 |
T |
|
| Q |
280 |
tctgacgttgatccatatatccaacccacctaatatt |
316 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
37007511 |
tctgatgttgatccatataaccatcccacctaatatt |
37007547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University