View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_1 (Length: 700)
Name: NF20946_low_1
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 11 - 686
Target Start/End: Original strand, 39583777 - 39584453
Alignment:
| Q |
11 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactnnnnnnn-gtgaaatcccaccgttgaga |
109 |
Q |
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| T |
39583777 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactaaaaaaaagtgaaatcccaccattgaga |
39583876 |
T |
|
| Q |
110 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttctttctcttacatgttttcatcaacttttagataaaccttgttga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39583877 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttccttctcttacatgttttcatcaacttttagataaaccttgttga |
39583976 |
T |
|
| Q |
210 |
tgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctccttttccttcagtcatatcaatttcttcctcatttattct |
309 |
Q |
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| T |
39583977 |
tgacatttgaacgagctttacacatggcctccaagggaattagcttcggagtagtggctccttttccttcagtcatatcaatttcttcctcacttattct |
39584076 |
T |
|
| Q |
310 |
tttccaatcaaaacattgtataagtaatgccaaagttaaactaactgtacgttgccctaagtttgctccaggacaagcccttcttcccaatccaaatgga |
409 |
Q |
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| T |
39584077 |
tttccaatcaaaacattggataagtaatgccaaagttaaactaactgtacgttgccctaagtttgctccaggacaagcccttcttcccaatccaaatgga |
39584176 |
T |
|
| Q |
410 |
atcaacttatcagcttctccttctttgtcatatctctctggcttgaattgtgttgggtcactccatagttgagaatctctgtgaattgcccaagcattaa |
509 |
Q |
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| T |
39584177 |
atcaacttatcagcttctccttctttgtcaaatctctctggcttgaattgtgttgggtcactccatagttgagaatctctgtgaattgcccaagcattaa |
39584276 |
T |
|
| Q |
510 |
ccaataaaatagtgttttttgggacattataacctcctatggtgcaatcttgtgaagaaaaatgaggagccaacaatgcaaatgcaggatgcaatcgaaa |
609 |
Q |
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| T |
39584277 |
ccaataaaatagtgttttttgggacaatataacctcctatggtgcaatcttgtgaagaaaaatgaggagccaacaatgcaaatgcaggatgcaatcgaaa |
39584376 |
T |
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| Q |
610 |
tgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtcctatgt |
686 |
Q |
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| T |
39584377 |
tgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtcctatgt |
39584453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 39572566 - 39572713
Alignment:
| Q |
175 |
catgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctcctttt |
274 |
Q |
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| T |
39572566 |
catgttttcaccggcttttagaaaaaccttgttgatgacatttgagcgagctatacacatggcctctaagggaattggctttggagtagtgactcctttt |
39572665 |
T |
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| Q |
275 |
ccttcagtcatatcaatttcttcctcatttattcttttccaatcaaaaca |
324 |
Q |
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| T |
39572666 |
ccttaactc--atcaatttctttctcacttattattttccaatcgaaaca |
39572713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 450
Target Start/End: Original strand, 12151489 - 12151563
Alignment:
| Q |
376 |
tccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcatatctctctgg |
450 |
Q |
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| T |
12151489 |
tccaggacaagcccttcttccaaaaccaaatgcaattaacttatttacctcaccttctttttcaaatctctctgg |
12151563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 456
Target Start/End: Original strand, 38974762 - 38974843
Alignment:
| Q |
375 |
ctccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcatatctctctggcttgaa |
456 |
Q |
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|||| ||||||||||||||||| || ||||||| ||||||||| || ||||||||||| ||| | ||||| |||||||| |
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| T |
38974762 |
ctcctggacaagcccttcttcctaacccaaatgcaatcaacttgtctaactctccttctttctcaaacctctcaggcttgaa |
38974843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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