View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_12 (Length: 466)
Name: NF20946_low_12
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 5418363 - 5418085
Alignment:
| Q |
1 |
aaatgtagtgacagctaaaaattgcaagcaaagagacagctggatagtgggtttggtagtgtggtattatgtgcggaagccgcgtacgtactttatggct |
100 |
Q |
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| T |
5418363 |
aaatgtattgacatctcaaaattgcaagcaaagagacagctggatagtgggtttggtagtgtggtattatgtgcggaagccgcgtacgtactttatggct |
5418264 |
T |
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| Q |
101 |
ttattgatccatactcgaatttaattgtcgtttgtcccctatatgtatatatattgattgatcatcaagatgaaacgttgcatatgcatattgatattgt |
200 |
Q |
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| T |
5418263 |
ttattgatccatactcgaatttaattgtcgtttgtcccctatatgtatatatattgattgatcatcaagatgaaacgttgcatatgcatattgatattgt |
5418164 |
T |
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| Q |
201 |
caaattgccatattcattgcattgtatgagttgttcatagcaccaaaaactgtgtttgtttacgtggcttttttctctg |
279 |
Q |
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| T |
5418163 |
caaattgccatattcattgcattgtatgagttgttcatagcaccaaaaactgtgtttgtttacgtggcttttttctctg |
5418085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 275 - 450
Target Start/End: Original strand, 5418709 - 5418884
Alignment:
| Q |
275 |
ctctgctctagtgagtgccactttagttaactttcatatagttcatctaaatattttctcaatattctacactttgacagcaagatgaagccagcatttg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5418709 |
ctctgctctagtgagtgccactttagttaactttcatatagttcatctaaatcttttctcaatattctacactttgacagcaagatgaagccagcatttg |
5418808 |
T |
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| Q |
375 |
cagctatgttacttgtgtgtcttatccttagctcatttatgttcgaaatgtccattgctggcactggtatgttata |
450 |
Q |
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| T |
5418809 |
cagctatgttacttgtgtgtcttatccttagctcatttatgttcgaaatgtccattgctggcactggtatgttata |
5418884 |
T |
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