View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20946_low_13 (Length: 445)

Name: NF20946_low_13
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20946_low_13
NF20946_low_13
[»] chr3 (4 HSPs)
chr3 (1-445)||(46240074-46240518)
chr3 (25-308)||(23541492-23541775)
chr3 (31-309)||(30038134-30038412)
chr3 (25-210)||(34584674-34584859)
[»] chr7 (3 HSPs)
chr7 (1-339)||(3437067-3437405)
chr7 (46-212)||(14798952-14799118)
chr7 (46-212)||(15245944-15246110)
[»] chr5 (1 HSPs)
chr5 (25-309)||(29878125-29878409)
[»] chr8 (1 HSPs)
chr8 (25-309)||(3921199-3921483)
[»] chr4 (3 HSPs)
chr4 (133-309)||(6869027-6869201)
chr4 (25-309)||(4497222-4497506)
chr4 (22-200)||(11318291-11318469)
[»] scaffold0300 (1 HSPs)
scaffold0300 (25-309)||(18005-18289)
[»] chr6 (1 HSPs)
chr6 (25-309)||(24676042-24676326)
[»] scaffold0140 (1 HSPs)
scaffold0140 (88-188)||(40053-40153)
[»] chr1 (2 HSPs)
chr1 (206-309)||(36915336-36915439)
chr1 (25-210)||(30964560-30964745)
[»] scaffold0121 (1 HSPs)
scaffold0121 (22-200)||(43429-43607)
[»] chr2 (1 HSPs)
chr2 (22-200)||(18131561-18131739)


Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 46240074 - 46240518
Alignment:
Q  1 gttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccattta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46240074 gttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccattta 46240173  T
Q  101 ttggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240174 ttggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 46240273  T
Q  201 cattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240274 cattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcag 46240373  T
Q  301 cagaaggtaagtgatgtcagtctatttcatgtatttaattaatatatagatcatagattaatattgtaacattattgttgttgaatatttcagggactaa 400  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46240374 cagaaggtaaatgttgtcagtctatttcatgtatttaattaatatatagatcatagattaatattgtaacattattggtgttgaatatttcagggactaa 46240473  T
Q  401 tgagtgtgtttgaagagatgtttgagactgttgagcacaggttct 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46240474 tgagtgtgtttgaagagatgtttgagactgttgagcacaggttct 46240518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 23541492 - 23541775
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    |||||||||||||| ||||| |||||||||||||||||||| || ||||| || |  ||||| ||||| |||||| ||||||| ||||| |||||| |||    
T  23541492 caacccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatggatgtcatttaa 23541591  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 224  Q
    |||||||||||||||||||||| || || | ||||||||| |||||||||||||| || |||||  | |||||||| || || |||||  |||| ||||     
T  23541592 agacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttccattggcatttggaatagtagaaacaaagtgtaggga 23541691  T
Q  225 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt 308  Q
    ||||||||| |||||||||||| |  |  ||||||||||||| |  ||||  |||||||| |||||||||||||| ||||||||    
T  23541692 aagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt 23541775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 30038412 - 30038134
Alignment:
Q  31 aggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaa 130  Q
    |||||||| |||||||| || ||||||||||| || || |||||||| | |  ||  || || || ||| |||| || |||||||| ||  | || ||||    
T  30038412 aggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttgaaaacaa 30038313  T
Q  131 agtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctg 230  Q
      || |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||    
T  30038312 gatacgggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttg 30038213  T
Q  231 gaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    ||| ||||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038212 gaaatggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 34584674 - 34584859
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||| |||||||    ||||| ||||| || || || || || ||||| |||||| | |    
T  34584674 caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga 34584773  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa 210  Q
    | ||| | ||||| || ||||| || || ||||| || |||||  | |||||||| || | ||||||||| ||||| |||||||||    
T  34584774 aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa 34584859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3437405 - 3437067
Alignment:
Q  1 gttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccattta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3437405 gttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaaatggatgtaggccattta 3437306  T
Q  101 ttggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437305 ttggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 3437206  T
Q  201 cattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437205 cattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcag 3437106  T
Q  301 cagaaggtaagtgatgtcagtctatttcatgtatttaat 339  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  3437105 cagaaggtaagtgttgtcagtctatttcatgtatttaat 3437067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 14799118 - 14798952
Alignment:
Q  46 tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac 145  Q
    ||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||     
T  14799118 tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat 14799019  T
Q  146 tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac 212  Q
    |  |  | ||||| || ||||| |||||||| || ||||||||| | || |||||  ||||||||||    
T  14799018 tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 15246110 - 15245944
Alignment:
Q  46 tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac 145  Q
    ||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||     
T  15246110 tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat 15246011  T
Q  146 tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac 212  Q
    |  |  | ||||| || ||||| |||||||| || ||||||||| | || |||||  ||||||||||    
T  15246010 tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 29878125 - 29878409
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    ||||| |||||||| |||||||| || ||||||||||| || || |||||||| | |  ||  || || || ||| |||| || |||||||| ||  | |    
T  29878125 caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga 29878224  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 224  Q
    | ||||  |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| ||     
T  29878225 aaacaagatatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga 29878324  T
Q  225 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    ||| ||||| ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878325 aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 309
Target Start/End: Complemental strand, 3921483 - 3921199
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    ||||| |||||||| |||||||| || ||||||||||| || || |||||||| | |  ||  || || || ||| |||| || |||||||| ||  | |    
T  3921483 caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga 3921384  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 224  Q
    | ||||  || ||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| ||     
T  3921383 aaacaagataagggggacaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga 3921284  T
Q  225 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    ||| ||||| ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921283 aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 309
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
Q  133 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 232  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  233 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    | ||||||||| |||||||| |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869127 aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 309
Target Start/End: Complemental strand, 4497506 - 4497222
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    ||||| || ||||| ||||| |||||||  |||||||| ||||| | ||| || | |  || |||||| || ||| | ||||||||||| || ||  | |    
T  4497506 caaccaagatttgggtctttctacttttcctttgatggatgcaagagaggattcaaagctgcatgtagaccttttgtgggggttgatgggtgccacttga 4497407  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 224  Q
    |||| || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||    
T  4497406 agactaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggc 4497307  T
Q  225 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    ||||||||| ||||| |||||| || || || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497306 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 11318469 - 11318291
Alignment:
Q  22 ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc 121  Q
    ||||| || |||||||||   ||||| ||||  |||||||| ||||||||||| |||   |  | |||||| || ||||| || |||||||| |||||||    
T  11318469 ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc 11318370  T
Q  122 taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 200  Q
    ||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||||| | ||||||||    
T  11318369 taaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatattttcctttagcatttgg 11318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 18005 - 18289
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    |||||||| ||||| ||||| |||||||  |||||||||||||| | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  18005 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 18104  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 224  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  18105 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggc 18204  T
Q  225 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18205 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 309
Target Start/End: Complemental strand, 24676326 - 24676042
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    |||||||| ||||| ||||| |||||||  |||||||||||||| | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  24676326 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 24676227  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 224  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  24676226 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggc 24676127  T
Q  225 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 309  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676126 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  88 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 187  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  188 c 188  Q
    |    
T  40053 c 40053  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  206 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 305  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  306 ggta 309  Q
    ||||    
T  36915436 ggta 36915439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 30964560 - 30964745
Alignment:
Q  25 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 124  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||| |||||||    ||||| ||||| || || || || || ||||| |||||| | |    
T  30964560 caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga 30964659  T
Q  125 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa 210  Q
    | ||| | ||||| || ||||| || || ||||| || |||||  | |||||||| || | ||||||||| ||||| |||||||||    
T  30964660 aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa 30964745  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 43429 - 43607
Alignment:
Q  22 ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc 121  Q
    ||||| || |||||||||   ||||| ||||  |||||||| ||||||||||| |||   |  | |||||| || ||||| || |||||||| |||||||    
T  43429 ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc 43528  T
Q  122 taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 200  Q
    ||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | ||||||||    
T  43529 taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg 43607  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 18131739 - 18131561
Alignment:
Q  22 ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc 121  Q
    ||||| || |||||||||   ||||| ||||  |||||||| ||||||||||| |||   |  | |||||| || ||||| || |||||||| |||||||    
T  18131739 ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc 18131640  T
Q  122 taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 200  Q
    ||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | ||||||||    
T  18131639 taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg 18131561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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