View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_15 (Length: 426)
Name: NF20946_low_15
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 34043004 - 34042598
Alignment:
| Q |
1 |
cagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcctcgagagctgaatgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34043004 |
cagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcatcactcctcgagagctgaatgtaa |
34042905 |
T |
|
| Q |
101 |
caaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaaagcgggagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042904 |
caaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaaagcgggagaag |
34042805 |
T |
|
| Q |
201 |
aatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatgacatgaattttctcaatgaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34042804 |
aatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatggcatgaattttctcaatgaa |
34042705 |
T |
|
| Q |
301 |
tcgatgatgaaattcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtcatgaggggttgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042704 |
tcgatgatgaaattcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtcatgaggggttgtg |
34042605 |
T |
|
| Q |
401 |
aaggtgt |
407 |
Q |
| |
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||||||| |
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| T |
34042604 |
aaggtgt |
34042598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 4046209 - 4046366
Alignment:
| Q |
1 |
cagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcctcgagagctgaatgtaa |
100 |
Q |
| |
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|||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
4046209 |
cagattcaatttgtgctgcgatttgaaaagattgaaatagttcatcacaaggtacggaataaatgaatcaggatcatcactcctcgagaactgaatgtaa |
4046308 |
T |
|
| Q |
101 |
caaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
158 |
Q |
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||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046309 |
caaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 4046456 - 4046531
Alignment:
| Q |
313 |
ttcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtca |
388 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
4046456 |
ttcaagaaaacaaagctcaaaatgatgactgaccttgacgattacagaaacagcaagattgcgaaaaagaatgtca |
4046531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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