View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20946_low_17 (Length: 394)

Name: NF20946_low_17
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20946_low_17
NF20946_low_17
[»] chr7 (24 HSPs)
chr7 (12-373)||(38286320-38286681)
chr7 (70-240)||(38157851-38158021)
chr7 (281-373)||(42796366-42796458)
chr7 (283-373)||(35083763-35083853)
chr7 (281-373)||(35073685-35073777)
chr7 (70-240)||(38150113-38150282)
chr7 (99-240)||(38188013-38188154)
chr7 (281-373)||(35084736-35084828)
chr7 (281-373)||(35100037-35100129)
chr7 (65-225)||(38173310-38173470)
chr7 (306-373)||(33860015-33860082)
chr7 (306-373)||(34145945-34146012)
chr7 (306-373)||(34181423-34181490)
chr7 (304-370)||(37883172-37883238)
chr7 (281-373)||(38173541-38173633)
chr7 (281-373)||(45585292-45585384)
chr7 (83-240)||(36745035-36745192)
chr7 (168-225)||(37883350-37883407)
chr7 (302-373)||(38166996-38167067)
chr7 (99-240)||(33860163-33860304)
chr7 (99-240)||(34146093-34146234)
chr7 (99-240)||(34181201-34181342)
chr7 (152-240)||(38166831-38166919)
chr7 (313-373)||(36469424-36469484)
[»] chr3 (1 HSPs)
chr3 (20-373)||(2223728-2224081)
[»] chr5 (1 HSPs)
chr5 (281-373)||(9663397-9663489)
[»] chr2 (4 HSPs)
chr2 (302-373)||(12410914-12410986)
chr2 (302-373)||(12422974-12423046)
chr2 (65-124)||(12409845-12409904)
chr2 (65-124)||(12421905-12421964)
[»] chr6 (8 HSPs)
chr6 (306-373)||(25562974-25563041)
chr6 (306-373)||(25568591-25568658)
chr6 (306-373)||(26102486-26102553)
chr6 (306-373)||(26002459-26002526)
chr6 (83-240)||(4164357-4164514)
chr6 (83-240)||(4225978-4226135)
chr6 (99-240)||(25563124-25563265)
chr6 (99-240)||(26102636-26102777)
[»] scaffold0176 (1 HSPs)
scaffold0176 (281-373)||(23943-24035)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 38286320 - 38286681
Alignment:
Q  12 atgaagggtaatgtgtatggacgtatgtaatcaaaatcagcatcatcatcatcttgatatgataagatcaattcaagacgtttgactcccttagcaattc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38286320 atgaagggtaatgtgtatggacgtatgtaatcaaaatcagcatcatcatcatcttgatatgataagatcaattcaagacgtttgactcccttagcaatta 38286419  T
Q  112 ctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgatgatgcagcatgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38286420 ctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgataatgcagcatgaa 38286519  T
Q  212 ttgatccactcttgcggtaaattcagattcgaccaattcatagagtgtgatgttttctggaaatttatcatagtcaaacaaggtacgaatatcaaagttg 311  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  38286520 ttgatccactcttgcggtaaattcagattcgacccattcatagagtgtgatgttttctggaaatttatcatagtcacacaaggtatgaatatcaaagttg 38286619  T
Q  312 aggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38286620 aggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 38286681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 38157851 - 38158021
Alignment:
Q  70 atgataagatcaattcaagacgtttgactcccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactag 169  Q
    |||| |||| |||||||| ||||||| | ||||||||||||||||||| |||||| || || |||  | || ||| ||||| ||||||||||||   |||    
T  38157851 atgagaagagcaattcaatacgtttggcacccttagcaattcctttggtaatcattctgtcaatggaatcattgtatttaggacctaatggaaaacttag 38157950  T
Q  170 tcggattgaccggatcatgtcaccttgatgatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
    ||||||||| |  |||||||| ||||||  |||||||||||||||||||| ||||  || |||||||||||    
T  38157951 tcggattgaactaatcatgtcgccttgaaaatgcagcatgaattgatccaatcttttggcaaattcagatt 38158021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 42796458 - 42796366
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| |||| ||| |||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| | ||||||||||||||    
T  42796458 atagtcaaacatggtatgaagatcaaagttgaggtccgtccttaatccccattcgtgaatccatcgtttggacaatgcgcttgttttcaccaa 42796366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 35083763 - 35083853
Alignment:
Q  283 agtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||| |||| ||| |||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  35083763 agtcaaacatggtatgaagatcaaagttgaggtccgtccttaatccccattcgtgaacccatcgtttggacaatgcactagttttcaccaa 35083853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 35073685 - 35073777
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| |||| ||| |||||||||||||||| |||| |||||||||||||||| |||| |||| |||||| |||| |||||||||||    
T  35073685 atagtcaaacatggtatgaagatcaaagttgaggtccgtccttaatccccattcgtgaacccatcgtttagacaatgcactagttttcaccaa 35073777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 38150113 - 38150282
Alignment:
Q  70 atgataagatcaattcaagacgtttgactcccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactag 169  Q
    |||| |||| |||||||| ||||||| | ||||||| |||||||||||||||||| || || ||  || |  ||||||||| ||||||||||||   ||     
T  38150113 atgagaagagcaattcaatacgtttggcacccttagtaattcctttggaaatcattctgtcaattgcatct-tgtgtttagaacctaatggaaaatttac 38150211  T
Q  170 tcggattgaccggatcatgtcaccttgatgatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
    ||||||||| |  ||||| ||| |||||| |||||||||||||||||||| ||||  || |||||||||||    
T  38150212 tcggattgaactaatcatatcatcttgataatgcagcatgaattgatccaatcttttggcaaattcagatt 38150282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 38188013 - 38188154
Alignment:
Q  99 cccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgat 198  Q
    |||||||||||||||||||||||||  || || |||||| || ||||||||||| ||||||||||   || ||| | ||| ||||| ||  |||||||||    
T  38188013 cccttagcaattcctttggaaatcactctgtcaatgacaacactgtgtttagtatctaatggaaaatttactcgaactgaacggatgatagcaccttgat 38188112  T
Q  199 gatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
     ||| |||||||||||||||| ||||| |  |||||||||||    
T  38188113 aatgtagcatgaattgatccaatcttgtgacaaattcagatt 38188154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 35084736 - 35084828
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| |||| ||| ||||||||||||||||  ||| |||||||||||||||| |||| |||| |||||| |||| |||||||||||    
T  35084736 atagtcaaacatggtatgaagatcaaagttgaggtccgcccttaatccccattcgtgaacccatcgtttagacaatgcactagttttcaccaa 35084828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 35100037 - 35100129
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| |||| ||| |||||||||||||||| |||| |||||||||||||||| |||| |||  |||||| |||| |||||||||||    
T  35100037 atagtcaaacatggtatgaagatcaaagttgaggtccgtccttaatccccattcgtgaacccatcgttcagacaatgcactagttttcaccaa 35100129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 38173310 - 38173470
Alignment:
Q  65 ttgatatgataagatcaattcaagacgtttgactcccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaac 164  Q
    ||||||||| |||| || ||||| |||||  || |||||||||||||||||| |||||||  | || |||||| || | |||| | |||||||||||||     
T  38173310 ttgatatgagaagagcagttcaatacgttccacacccttagcaattcctttgaaaatcattttgtcaatgacatcactatgttgattacctaatggaaaa 38173409  T
Q  165 actagtcggattgaccggatcatgtcaccttgatgatgcagcatgaattgatccactcttg 225  Q
     | | ||| | ||| ||||||||||||||| |||| | |||||||||| |||||| |||||    
T  38173410 tccactcgaagtgaacggatcatgtcacctcgatgtttcagcatgaatcgatccattcttg 38173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 33860082 - 33860015
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  33860082 aagttaaggtccatccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 33860015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 34146012 - 34145945
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  34146012 aagttaaggtccatccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 34145945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 34181423 - 34181490
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  34181423 aagttaaggtccatccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 34181490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 37883238 - 37883172
Alignment:
Q  304 caaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcac 370  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||||||   |||||||||||    
T  37883238 caaaattgaggtccatcctgaatccccattcgtgaagccattgttaggacaatgtgcttgttttcac 37883172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 38173541 - 38173633
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| | || | | |||||| |||||||| || ||  ||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  38173541 atagtcaaacatgttatggagatcaaaattgaggtcaattcttgatctccattcatgaagccatcgtttggacaatacacttgttttcaccaa 38173633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 45585292 - 45585384
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| |||| |   ||||||||| ||||||||||| |||||||| || |||| |||| ||||||| ||| ||||||||||||||||    
T  45585292 atagtcaaacatggtatggtgatcaaagttaaggtccatccttaatccccaatcatgaatccattgtttggataatgcacttgttttcaccaa 45585384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 36745035 - 36745192
Alignment:
Q  83 ttcaagacgtttgactcccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccgg 182  Q
    ||||| ||||||| | |||||||||||||||||||| ||||  || || ||| || |  |||||| | | |||||||||||   || ||||||||| | |    
T  36745035 ttcaatacgtttggcacccttagcaattcctttggagatcaatctatcaatggcatccctgtgttcattgcctaatggaaattttactcggattgaactg 36745134  T
Q  183 atcatgtcaccttgatgatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
    ||||||||||||| || ||| ||||  |||||||||| ||| | || |||||||||||    
T  36745135 atcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagatt 36745192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37883407 - 37883350
Alignment:
Q  168 agtcggattgaccggatcatgtcaccttgatgatgcagcatgaattgatccactcttg 225  Q
    ||||||||||| | |||||||  ||||||||||||||||||||||||||||| |||||    
T  37883407 agtcggattgaactgatcatggtaccttgatgatgcagcatgaattgatccaatcttg 37883350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 38166996 - 38167067
Alignment:
Q  302 atcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||| ||||||||||| |||| |||||| ||||||||  | ||||||||| |||| |||||||||||    
T  38166996 atcaaagtttaggtccatccttaatctccattcctgaagccaccgcttggacaatgcactggttttcaccaa 38167067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 33860304 - 33860163
Alignment:
Q  99 cccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgat 198  Q
    |||||||||||||||||||| ||||  || || |||||| |  | |||| | ||| |||||||||   || ||| || || ||||||||| |||||| ||    
T  33860304 cccttagcaattcctttggagatcaatctatcaatgacatccctatgttcattacataatggaaattttactcgaatggaacggatcatggcacctttat 33860205  T
Q  199 gatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
     ||| ||||| |||||||||| ||||| || |||||||||||    
T  33860204 aatggagcataaattgatccaatcttgtggcaaattcagatt 33860163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 34146234 - 34146093
Alignment:
Q  99 cccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgat 198  Q
    |||||||||||||||||||| ||||  || || |||||| |  | |||| | ||| |||||||||   || ||| || || ||||||||| |||||| ||    
T  34146234 cccttagcaattcctttggagatcaatctatcaatgacatccctatgttcattacataatggaaattttactcgaatggaacggatcatggcacctttat 34146135  T
Q  199 gatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
     ||| ||||| |||||||||| ||||| || |||||||||||    
T  34146134 aatggagcataaattgatccaatcttgtggcaaattcagatt 34146093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 34181201 - 34181342
Alignment:
Q  99 cccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgat 198  Q
    |||||||||||||||||||| ||||  || || |||||| |  | |||| | ||| |||||||||   || ||| || || ||||||||| |||||| ||    
T  34181201 cccttagcaattcctttggagatcaatctatcaatgacatccctatgttcattacataatggaaattttactcgaatggaacggatcatggcacctttat 34181300  T
Q  199 gatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
     ||| ||||| |||||||||| ||||| || |||||||||||    
T  34181301 aatggagcataaattgatccaatcttgtggcaaattcagatt 34181342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 38166831 - 38166919
Alignment:
Q  152 acctaatggaaacactagtcggattgaccggatcatgtcaccttgatgatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
    ||||||||||||   || ||||||||| |  ||||| ||| |||||| |||||||||||||||||||| ||||  || |||||||||||    
T  38166831 acctaatggaaaatttactcggattgaactaatcatatcatcttgataatgcagcatgaattgatccaatcttttggcaaattcagatt 38166919  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 36469484 - 36469424
Alignment:
Q  313 ggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    |||||||||| |||| ||| |||||||||||  ||||||| ||||| || |||||||||||    
T  36469484 ggtccatccttaatctccactcgtgaagccaacgtttggataatacgctggttttcaccaa 36469424  T

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Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 2223728 - 2224081
Alignment:
Q  20 taatgtgtatggacgtatgtaatcaaaatcagcatcatcatcatcttgatatgataagatcaattcaagacgtttgactcccttagcaattcctttggaa 119  Q
    |||| ||||||| || || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2223728 taatatgtatgggcgcatataatcagaatcagcatcatcatcatcttgatatgataagatcaattcaagacgtttgacacccttagcaattcctttggaa 2223827  T
Q  120 atcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgatgatgcagcatgaattgatcca 219  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  2223828 atcatcctttcaatgacacctgtgtgtttggtacctaatggaaacacgagtcggattgaatggatcatgtcaccttgataatgcagcatgaattgatcca 2223927  T
Q  220 ctcttgcggtaaattcagattcgaccaattcatagagtgtgatgttttctggaaatttatcatagtcaaacaaggtacgaatatcaaagttgaggtccat 319  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||| |||   |||||||||||||||||||     
T  2223928 ctcttgcggcaaattcagattcgacccattcaaagagtgtgatgtcttttggaaatttatcatagtcaaacaaagtattgatatcaaagttgaggtccac 2224027  T
Q  320 cctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  2224028 cctgaatccccattcgtgaagccatagtttggacaatgtgattgttttcaccaa 2224081  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 9663489 - 9663397
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| |||| ||| |||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  9663489 atagtcaaacatggtatgaagatcaaagttgaggtccgtccttaatccccattcgtgaacccatcgtttggacaatgcactagttttcaccaa 9663397  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 12410914 - 12410986
Alignment:
Q  302 atcaaagttgaggtccatcctgaatcccc-attcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    |||||||||||||||||| || ||||||| |||||||||||||| |||||||||||  |||||||||||||||    
T  12410914 atcaaagttgaggtccattcttaatcccccattcgtgaagccatcgtttggacaatgtacttgttttcaccaa 12410986  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 12422974 - 12423046
Alignment:
Q  302 atcaaagttgaggtccatcctgaatcccc-attcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    |||||||||||||||||| || ||||||| |||||||||||||| |||||||||||  |||||||||||||||    
T  12422974 atcaaagttgaggtccattcttaatcccccattcgtgaagccatcgtttggacaatgtacttgttttcaccaa 12423046  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 12409845 - 12409904
Alignment:
Q  65 ttgatatgataagatcaattcaagacgtttgactcccttagcaattcctttggaaatcat 124  Q
    ||||||||| |||| || ||||| ||||||||| ||||| ||||||||||||||||||||    
T  12409845 ttgatatgagaagagcagttcaatacgtttgacacccttggcaattcctttggaaatcat 12409904  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 12421905 - 12421964
Alignment:
Q  65 ttgatatgataagatcaattcaagacgtttgactcccttagcaattcctttggaaatcat 124  Q
    ||||||||| |||| || ||||| ||||||||| ||||| ||||||||||||||||||||    
T  12421905 ttgatatgagaagagcagttcaatacgtttgacacccttggcaattcctttggaaatcat 12421964  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 25563041 - 25562974
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  25563041 aagttaaggtccatccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 25562974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 25568658 - 25568591
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  25568658 aagttaaggtccatccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 25568591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 26102553 - 26102486
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  26102553 aagttaaggtccatccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 26102486  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 26002526 - 26002459
Alignment:
Q  306 aagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||| ||||||| ||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||    
T  26002526 aagttaaggtccacccttaatccccattcgtgaatccattgtttggacaatgcactggttttcaccaa 26002459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 4164357 - 4164514
Alignment:
Q  83 ttcaagacgtttgactcccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccgg 182  Q
    ||||| ||||||| | |||||||||||||||||||||||||   | || |||||| |  | ||||    ||||||||||||   || |||||||||  ||    
T  4164357 ttcaatacgtttggcacccttagcaattcctttggaaatcaatttgtcaatgacatccctatgttggtcacctaatggaaaatttactcggattgaatgg 4164456  T
Q  183 atcatgtcaccttgatgatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
    |||||| ||||||| | ||||| |||||||||||||| | ||| || ||||| |||||    
T  4164457 atcatggcaccttggtaatgcatcatgaattgatccaatattgtggcaaattgagatt 4164514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 4225978 - 4226135
Alignment:
Q  83 ttcaagacgtttgactcccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccgg 182  Q
    ||||| ||||||| | |||||||||||||||||||||||||   | || |||||| |  | ||||    ||||||||||||   || |||||||||  ||    
T  4225978 ttcaatacgtttggcacccttagcaattcctttggaaatcaatttgtcaatgacatccctatgttggtcacctaatggaaaatttactcggattgaatgg 4226077  T
Q  183 atcatgtcaccttgatgatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
    |||||| ||||||| | ||||| |||||||||||||| | ||| || ||||| |||||    
T  4226078 atcatggcaccttggtaatgcatcatgaattgatccaatattgtggcaaattgagatt 4226135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 25563265 - 25563124
Alignment:
Q  99 cccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgat 198  Q
    |||||||||||||||||||| ||||  || |  |||||| |  | |||| | ||| |||||||||   || ||| || || ||||| ||| |||||| ||    
T  25563265 cccttagcaattcctttggagatcaatctatgaatgacatccctatgttgattacataatggaaattttactcgaatggaacggatgatggcacctttat 25563166  T
Q  199 gatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
     ||||||||| |||||||||| ||||| || |||||||||||    
T  25563165 aatgcagcataaattgatccaatcttgtggaaaattcagatt 25563124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 26102777 - 26102636
Alignment:
Q  99 cccttagcaattcctttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccggatcatgtcaccttgat 198  Q
    |||||||||||||||||||| ||||  || |  |||||| |  | |||| | ||| |||||||||   || ||| || || ||||| ||| |||||| ||    
T  26102777 cccttagcaattcctttggagatcaatctatgaatgacatccctatgttgattacataatggaaattttactcgaatggaacggatgatggcacctttat 26102678  T
Q  199 gatgcagcatgaattgatccactcttgcggtaaattcagatt 240  Q
     ||||||||| |||||||||| ||||| || |||||||||||    
T  26102677 aatgcagcataaattgatccaatcttgtggaaaattcagatt 26102636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 23943 - 24035
Alignment:
Q  281 atagtcaaacaaggtacgaatatcaaagttgaggtccatcctgaatccccattcgtgaagccatagtttggacaatacacttgttttcaccaa 373  Q
    ||||||||||| ||||   | ||| ||||| ||||||||||  ||||||||||| |||| |||| ||||||||||| |||| |||||||||||    
T  23943 atagtcaaacatggtatagagatcgaagtttaggtccatccgtaatccccattcatgaatccattgtttggacaatgcactggttttcaccaa 24035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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