View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_18 (Length: 363)
Name: NF20946_low_18
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 45283028 - 45283360
Alignment:
| Q |
12 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctgg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283028 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctgg |
45283127 |
T |
|
| Q |
112 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283128 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
45283227 |
T |
|
| Q |
212 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
45283228 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatgaacagc |
45283327 |
T |
|
| Q |
312 |
ttgaatgttgttgtcatgaacacacttggtgga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
45283328 |
ttgaatgttgttgtcatgaacacacttggtgga |
45283360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 45294413 - 45294748
Alignment:
| Q |
9 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45294413 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45294512 |
T |
|
| Q |
109 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45294513 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45294612 |
T |
|
| Q |
209 |
tctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaac |
308 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
45294613 |
tctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaac |
45294712 |
T |
|
| Q |
309 |
agcttgaatgttgttgtcatgaacacacttggtgga |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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| T |
45294713 |
agcttgaatgttgctgtcatgaacacacttggtgga |
45294748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 45303373 - 45303708
Alignment:
| Q |
9 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45303373 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45303472 |
T |
|
| Q |
109 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45303473 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45303572 |
T |
|
| Q |
209 |
tctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaac |
308 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
45303573 |
tctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaac |
45303672 |
T |
|
| Q |
309 |
agcttgaatgttgttgtcatgaacacacttggtgga |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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| T |
45303673 |
agcttgaatgttgctgtcatgaacacacttggtgga |
45303708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 45271254 - 45271586
Alignment:
| Q |
12 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |
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|
| T |
45271254 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctgg |
45271353 |
T |
|
| Q |
112 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45271354 |
aggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttct |
45271453 |
T |
|
| Q |
212 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
45271454 |
caccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatgaacagc |
45271553 |
T |
|
| Q |
312 |
ttgaatgttgttgtcatgaacacacttggtgga |
344 |
Q |
| |
|
|| ||||||||||||| ||||||| ||| |||| |
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|
| T |
45271554 |
ttcaatgttgttgtcacgaacacagttgttgga |
45271586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 45274784 - 45275102
Alignment:
| Q |
9 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
45274784 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
45274883 |
T |
|
| Q |
109 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
45274884 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
45274983 |
T |
|
| Q |
209 |
tctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
45274984 |
tctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatgaac |
45275083 |
T |
|
| Q |
309 |
agcttgaatgttgttgtca |
327 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45275084 |
agcttgaatgttgttgtca |
45275102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
229 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
323 |
Q |
| |
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|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
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| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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