View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20946_low_2 (Length: 646)
Name: NF20946_low_2
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_2 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 602; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Complemental strand, 46240071 - 46239442
Alignment:
| Q |
17 |
tgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
116 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240071 |
tgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
46239972 |
T |
|
| Q |
117 |
agctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatggttaccttcttattt |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46239971 |
agctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatggttaccttcttattt |
46239872 |
T |
|
| Q |
217 |
gtttgcagcttcttaaccacagcaaagttggccacccacctagaacaagcagatttgttttttgttttccttgcacaagtgtggtctctatccaaagact |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239871 |
gtttgcagcttcttaaccacagcaaagttagccacccacctagaacaagcagatttgttttttgttttccttgcacaagtgtggtctctatccaaagact |
46239772 |
T |
|
| Q |
317 |
ttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttctttgcaaattacccttaccctaccaggttcattttttgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46239771 |
ttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttgtttgcaaattacccttaccctaccaggttcattttttgg |
46239672 |
T |
|
| Q |
417 |
catctttatttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46239671 |
catctttatttcatgcccattcagcacattccactcaattattgcatccttgaattctctaagtgaattaaactccatacctaacttaaactcatacttt |
46239572 |
T |
|
| Q |
517 |
tcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagctatatagttcatcactatggtactctt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239571 |
tcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagctatatagttcatcactatggtactctt |
46239472 |
T |
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| Q |
617 |
ctgcttcatcatcaactttattccctttat |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
46239471 |
ctgcttcatcatcaactttattccctttat |
46239442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 46 - 257
Target Start/End: Complemental strand, 23541436 - 23541225
Alignment:
| Q |
46 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
145 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
|
| Q |
146 |
ctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagtt |
245 |
Q |
| |
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| | || |||||||||||||| || |||||||||||||||| || || || |||||||| || |||||||||||||| ||||||| ||| || |
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| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtcatccacaatatctgagattgttaccttttttgaagtttgcagcttctttaccacagaaaaatt |
23541237 |
T |
|
| Q |
246 |
ggccacccacct |
257 |
Q |
| |
|
||||||||||| |
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| T |
23541236 |
tgccacccacct |
23541225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 530
Target Start/End: Complemental strand, 23541058 - 23540952
Alignment:
| Q |
424 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
523 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| ||| ||||||||||||| | |||||||||| || ||||||||||||||||| ||||| | | |||| | |
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|
| T |
23541058 |
atttcatatccattaagcacattccattcacgtattgcatccttgaattgtgtgagtgaattgaattccatacctaacttaaattcatattgtgcattaa |
23540959 |
T |
|
| Q |
524 |
attgctc |
530 |
Q |
| |
|
||||||| |
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|
| T |
23540958 |
attgctc |
23540952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Original strand, 3437408 - 3438025
Alignment:
| Q |
17 |
tgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3437408 |
tgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
3437507 |
T |
|
| Q |
117 |
agctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatggttaccttcttattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3437508 |
agctatctgttttgctttccacgccctacc------------cactgcatgattcgtcctcatgtcatcgatgatgtcctctatggttaccttcttattt |
3437595 |
T |
|
| Q |
217 |
gtttgcagcttcttaaccacagcaaagttggccacccacctagaacaagcagatttgttttttgttttccttgcacaagtgtggtctctatccaaagact |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437596 |
gtttgcagcttcttaaccacagcaaagttagccacccacctagaacaagcatatttgttttttgttttccttgcacaagtgtggtctctatccaaagact |
3437695 |
T |
|
| Q |
317 |
ttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttctttgcaaattacccttaccctaccaggttcattttttgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437696 |
ttatttgataagtgtgactggtccccactctagagcaaaagaccatataaccacattgttgtttgcaaattacccttaccctaccaggttcattttttgg |
3437795 |
T |
|
| Q |
417 |
catctttatttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttt |
516 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437796 |
catctttatttcatgcccattcaacacatttcactcaattattgcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttt |
3437895 |
T |
|
| Q |
517 |
tcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagctatatagttcatcactatggtactctt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3437896 |
tcatttaattgctcctttctaaactttgcatatttgggcccattctcatggtcagagttatcagggtctgagctatatagttcatcactatggtattctt |
3437995 |
T |
|
| Q |
617 |
ctgcttcatcatcaactttattccctttat |
646 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
3437996 |
ctgcttcatcatcaactttcttccctttat |
3438025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 34459402 - 34459526
Alignment:
| Q |
424 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
523 |
Q |
| |
|
||||||| |||||| || ||||||||||| || || ||||||||||| ||||| | ||||||||| | ||| |||||| |||||| ||| || | |||| |
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|
| T |
34459402 |
atttcatacccattaagtacattccactctatcattgcatccttgaactctcttaatgaattaaattacatgcctaacctaaactaatagttcttgttta |
34459501 |
T |
|
| Q |
524 |
attgctcctttctaaactttgcata |
548 |
Q |
| |
|
|||||||| ||||||||||| |||| |
|
|
| T |
34459502 |
attgctcccttctaaacttttcata |
34459526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 4497985 - 4498109
Alignment:
| Q |
424 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
523 |
Q |
| |
|
||||||| |||||| || ||||||||||| || || ||||||||||| ||||| | ||||||||| |||||||||||| |||||||||| || | |||| |
|
|
| T |
4497985 |
atttcatacccattaagtacattccactctatcattgcatccttgaactctcttaatgaattaaattccatacctaacctaaactcatagttcttgttta |
4498084 |
T |
|
| Q |
524 |
attgctcctttctaaactttgcata |
548 |
Q |
| |
|
|||||||| ||||||||||| |||| |
|
|
| T |
4498085 |
attgctcccttctaaacttttcata |
4498109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 281
Target Start/End: Original strand, 4497607 - 4497797
Alignment:
| Q |
91 |
tcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatga |
190 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||| ||||| ||||| ||||| ||||| || | | | |||| || || |||||||| |||| ||||| |
|
|
| T |
4497607 |
tcagcatccccatcaacaatcttctgtgctatctgctttgccttccatgcccttccttttgtaagatctactgagtggttggtcctcatatcattcatga |
4497706 |
T |
|
| Q |
191 |
tgtcctctatggttaccttcttatttgtttgcagcttcttaaccacagcaaagttggccacccacctagaacaagcagatttgttttttgt |
281 |
Q |
| |
|
|||| | || || || |||| | ||||||| || || ||||| ||||||||||| || |||||| |||| |||||| |||||||||| |
|
|
| T |
4497707 |
tgtctttgatagtgactttctcagttgtttgaagtttgttaacaacagcaaagtttgcaacccacttagacttggcagatctgttttttgt |
4497797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 424 - 548
Target Start/End: Complemental strand, 17529 - 17405
Alignment:
| Q |
424 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
523 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||| | | |||||||| |||||||||||| |||||||||| | | || | |
|
|
| T |
17529 |
atttcatgaccattaagtacattccactctattattgcatctttgaactcttttaaagaattaaattccatacctaacataaactcatagtccttgttca |
17430 |
T |
|
| Q |
524 |
attgctcctttctaaactttgcata |
548 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
17429 |
attgttcctttctaaacttttcata |
17405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 24676802 - 24676926
Alignment:
| Q |
424 |
atttcatgcccattcagcacattccactcaattatagcatccttgaattctctgagtgaattaaactccatacctaacttaaactcatacttttcattta |
523 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||| | | |||||||| |||||||||||| |||||||||| | | || | |
|
|
| T |
24676802 |
atttcatgaccattaagtacattccactctattattgcatctttgaactcttttaaagaattaaattccatacctaacataaactcatagtccttgttca |
24676901 |
T |
|
| Q |
524 |
attgctcctttctaaactttgcata |
548 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
24676902 |
attgttcctttctaaacttttcata |
24676926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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