View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_20 (Length: 347)
Name: NF20946_low_20
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 5667160 - 5667345
Alignment:
| Q |
2 |
agttcaagaactatgaagttgtcacagtgttctaaaaactcaagaattcaaaaaatgtcacagcctaaactagaagtttcttaaaacaccaaaacacatc |
101 |
Q |
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| T |
5667160 |
agttcaagaactatgaagttgtcacagtgttctaaaaactcaagaattcaaaaaatgtcacagcctaaactagaagtttcttaaaacaccaaaacacatc |
5667259 |
T |
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| Q |
102 |
acagcaaagaaaataaacttgttgtgaatggtgaatgtgagtaaggatgtggaagaatttgtttaaggaagataatggatttttat |
187 |
Q |
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| T |
5667260 |
acaccaaagaaaataaactagttgtgaatggtgaatgtgagtaaggatgtggaagaatttgtttaaggaagataatggatttttat |
5667345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 5668308 - 5668456
Alignment:
| Q |
187 |
taacatatgagaataggagttctctcctctatttattttttctactctttcttgattctgcattcttatttatagtcaaaactagttcaaggtgaagagc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5668308 |
taacatatgagaataggagttctctcctctatttattttttctactctttcttgattctgcattcttatttatagtcaaaactaggtcaaggtgaagagc |
5668407 |
T |
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| Q |
287 |
aactgctaaatattcaaagttagttatttgcagaccaaagttgttattg |
335 |
Q |
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| T |
5668408 |
aactgctaaatattcaaagttagttatatgcagaccaaagttgttattg |
5668456 |
T |
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