View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_21 (Length: 292)
Name: NF20946_low_21
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 34420797 - 34420542
Alignment:
| Q |
20 |
aacctgtgtccatcaaaaaacaattcatatatgagattcagttttgcttttaaataaactaattataagtcgcgtaacgcctcaaatcttgcaaactgta |
119 |
Q |
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| T |
34420797 |
aacctgtgtccatcaaaaaacaattcatatatgagattcagttttgcttttaaataaactaattataagtcgcgtaacgcctcaaatcttgcaaactgta |
34420698 |
T |
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| Q |
120 |
caaagttgttcacttttaatctactgaattgagtgataatgaaaaaattatttataataggatatgtaaattagctcattattcaggctgaggcctcagc |
219 |
Q |
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| T |
34420697 |
caaagttgttcacttttaatctactgaattgagtgataatggaaaaattatttataataggatatgtaaattagctcattattgaggctg-ggcctcagc |
34420599 |
T |
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| Q |
220 |
ttgaaaacagtgtcaatcacagagagctctgttgctgtagtgtctgagccacaaaat |
276 |
Q |
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| T |
34420598 |
ttgaaaacagtgtcaatcacagagagctctgttgctgtagtgtctgagccacaaaat |
34420542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 34424743 - 34424680
Alignment:
| Q |
213 |
cctcagcttgaaaacagtgtcaatcacagagagctctgttgctgtagtgtctgagccacaaaat |
276 |
Q |
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| T |
34424743 |
cctcagcttgaaaacactctcaatcactgagagttctgttgctgtagtgtctgaaccacaaaat |
34424680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 24347814 - 24347751
Alignment:
| Q |
213 |
cctcagcttgaaaacagtgtcaatcacagagagctctgttgctgtagtgtctgagccacaaaat |
276 |
Q |
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| T |
24347814 |
cctcaacttgaaaacactctcaataacagagagttctgttgctgtggtgtctgaaccacaaaat |
24347751 |
T |
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