View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_22 (Length: 283)
Name: NF20946_low_22
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 41065915 - 41066166
Alignment:
| Q |
18 |
ctatctctcccggaatcataccagatagctgattgtcaaacagtgctagctgctgaagctttgaacagttgccaattgtggttggaattccaccgtgtaa |
117 |
Q |
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| T |
41065915 |
ctatctctcccggaatcataccagaaagctgattgtcaaacagtgctagctgctgaagctttgaacagttgccaattgtggttggaattccaccgtgtaa |
41066014 |
T |
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| Q |
118 |
cgaattcgaattcaaagataaccatctcagctcagataactttcctatttcttttggtatagttcctgttaaagtattgtagctaagatcaagagtaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066015 |
cgaattcgaattcaaagataaccatctcagctcagataactttcctatttcttttggtatagttcctgttaaagtattgtagctaagatcaagagtaact |
41066114 |
T |
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| Q |
218 |
agagatgacaagtttccaactgaacttggaatctcacctgtgagatttccat |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066115 |
agagatgacaagtttccaactgaacttggaatctcacctgtgagatttccat |
41066166 |
T |
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