View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_23 (Length: 283)
Name: NF20946_low_23
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 20429218 - 20428956
Alignment:
| Q |
1 |
atgacagtgaaaaaaggagccttgacatcaggacaagcacataagtgttatgatatatgaggtttgaaatccaaaactattataaacttataatgtttgg |
100 |
Q |
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| T |
20429218 |
atgacagtgaaaaaaggagccttgacatcaggacaagcacatatgtgttatgatatatgaggtttgaaagccaaaactattataaacttataatgtttgc |
20429119 |
T |
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| Q |
101 |
tcacttgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagcattaaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20429118 |
tcacatgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagcattaaa |
20429019 |
T |
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| Q |
201 |
atacataccatgttctggcataaaggagctctaggagccagcggatcaaggcgaggcactccc |
263 |
Q |
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| T |
20429018 |
atacataccatgttctggcataaaggagctctaggagccagcggatcaagacgaggcactccc |
20428956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 44439422 - 44439290
Alignment:
| Q |
132 |
aaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagcattaaaatacataccatgttctggcataaaggagctc |
231 |
Q |
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||||||||||||| ||| | ||||| |||||||||| ||| ||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
44439422 |
aaaattactgcaatttttataaaattataacacttagaataacaataagcaaacaagagtagtattaaaatacataccgtgttctggcctaaaggagctc |
44439323 |
T |
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| Q |
232 |
taggagccagcggatc-aaggcgaggcactccc |
263 |
Q |
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|| |||||||| |||| |||| ||||||||||| |
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| T |
44439322 |
taagagccagctgatcaaaggtgaggcactccc |
44439290 |
T |
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