View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_25 (Length: 280)
Name: NF20946_low_25
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 30849526 - 30849782
Alignment:
| Q |
18 |
taaaactgctattaagccttttgtaaatcataag-catatagaataaataaacgaacaagaatcatattagatctttgtttgttccattaagataaaatg |
116 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30849526 |
taaaactgctattaagccttttgcaaatcataagtcatatagaataaataaacgaacaaaaatcatattagatctttgtttgttccattaagataaaatg |
30849625 |
T |
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| Q |
117 |
tgaccttaataaccttatggaccttgtttttcgcttaatacaaatcaacttttgcgtaatccagctgttgaagtagtcatcctaccctatatataatata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30849626 |
tgaccttaataaccttatggaccttgtttttcgcttaatacaaatcaacttttgcgtaatccagctgttgaagtagtcatcctaccctatatataatata |
30849725 |
T |
|
| Q |
217 |
tgtctctagtataagtctcaatcttcctaaataaattggattcttctctctgctcct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30849726 |
tgtctctagtataagtctcaatcttcctaaataaattggattcttctctctgatcct |
30849782 |
T |
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