View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_29 (Length: 228)
Name: NF20946_low_29
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 11859064 - 11859263
Alignment:
| Q |
11 |
gagatgaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
110 |
Q |
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| T |
11859064 |
gagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
11859163 |
T |
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| Q |
111 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgttga |
210 |
Q |
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| T |
11859164 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgttga |
11859263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 12037875 - 12038034
Alignment:
| Q |
24 |
ttatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcg |
123 |
Q |
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| T |
12037875 |
ttatagataaactggtgaacctgaagaacactgatgctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctca |
12037974 |
T |
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| Q |
124 |
tctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaa |
183 |
Q |
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| T |
12037975 |
tctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa |
12038034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 11826945 - 11827037
Alignment:
| Q |
60 |
ctgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
152 |
Q |
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| T |
11826945 |
ctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaag |
11827037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 11903379 - 11903281
Alignment:
| Q |
83 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
181 |
Q |
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| T |
11903379 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
11903281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 11730826 - 11730895
Alignment:
| Q |
83 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
152 |
Q |
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| T |
11730826 |
attgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaag |
11730895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 11730382 - 11730451
Alignment:
| Q |
83 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
152 |
Q |
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| T |
11730382 |
attgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaag |
11730451 |
T |
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