View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_3 (Length: 637)
Name: NF20946_low_3
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 22 - 620
Target Start/End: Original strand, 14433159 - 14433757
Alignment:
| Q |
22 |
actcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattacatcatggtcagcctcataagtaataggagtgtattgtggcc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433159 |
actcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattacatcatggtcagcctcataagtaataggagtgtattgtggcc |
14433258 |
T |
|
| Q |
122 |
aataataggccaagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14433259 |
aataataggccaagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaagtcaccacctc |
14433358 |
T |
|
| Q |
222 |
tatgtaagattcatttttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaata |
321 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433359 |
tatgtaagattcatttttatcatacacagcagcatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaata |
14433458 |
T |
|
| Q |
322 |
aaattaaacacattgttagttaaccttccttgcatggtcggcccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttt |
421 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14433459 |
aaattaaacgcattgttagttaaccttccttgcatggtcggcccagtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttt |
14433558 |
T |
|
| Q |
422 |
tagtctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaa |
521 |
Q |
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| T |
14433559 |
tagtctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaa |
14433658 |
T |
|
| Q |
522 |
ggagacaaagcaaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
620 |
Q |
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| T |
14433659 |
ggagacaaagcgaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 14441490 - 14441791
Alignment:
| Q |
22 |
actcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattacatcatggtcagcctcataagtaataggagtgtattgtggcc |
121 |
Q |
| |
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|||||||| |||||||||||| ||||||| ||||||||||| || ||||||||| | ||||| || | | || | |||||| |||||||||||||||| |
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| T |
14441490 |
actcacccgatacgggaaccaccatgaccggtgcatttggataacgtgaagagcgtaacatcttgattaatctggtgagtaattggagtgtattgtggcc |
14441589 |
T |
|
| Q |
122 |
aataataggccaagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctc |
221 |
Q |
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| ||||||||||| |||| ||| | |||||||| | || | ||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||| |
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| T |
14441590 |
agtaataggccaaatcataaattagtttcccttcaacttccgagttcaccactggtgttcgaagagtcccatcagggttgtttggggaggtcactacctc |
14441689 |
T |
|
| Q |
222 |
tatgtaagattcatttttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatat-attaattgcatttttgtattcctacaaaat |
320 |
Q |
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|||||||| || |||| |||||||| |||| ||||||||||||||||||| | |||||| |||| ||| || ||| ||| || ||||||||||||||| |
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| T |
14441690 |
tatgtaaggtttgttttcatcatacaaagcagcatcaccaccccattgaaatagccttgattgca-tatgatcaatcacatcttggtattcctacaaaat |
14441788 |
T |
|
| Q |
321 |
aaa |
323 |
Q |
| |
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||| |
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| T |
14441789 |
aaa |
14441791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 610
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
457 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
556 |
Q |
| |
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||||||| |||||||||||||||| || || ||||||||||||||| ||||||| | |||| ||||||| | ||| ||||| ||| | ||| ||||| |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
|
| Q |
557 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
610 |
Q |
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|| |||||||||||| | |||||| | |||||||| || ||| |||| ||||| |
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| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
364 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
432 |
Q |
| |
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||||||||||||||||||||| ||| ||||||| ||||||| ||| ||| | ||||||||||||||| |
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| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 452
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
364 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
452 |
Q |
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||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |||||||||||| |||| || || |||||||||||| |
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| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
360 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
410 |
Q |
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| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
359 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
408 |
Q |
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|||||||||||| ||||||||||||||||| ||||| || ||||||||| |
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| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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