View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20946_low_30 (Length: 216)
Name: NF20946_low_30
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_30 |
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| [»] scaffold0754 (1 HSPs) |
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| [»] scaffold0563 (5 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 37225297 - 37225128
Alignment:
| Q |
29 |
ctattattctaaccaaatgaggtccaaagggttgtaagttgcatcagcagctnnnnnnntgatggttcaaaggctaggctcaccggcttagtagactaga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225297 |
ctattattctaaccaaatgaggtccaaagggttgtaagttgcatcagcagctaaaaaaatgatggttcaaaggctaggctcaccggcttagtagactaga |
37225198 |
T |
|
| Q |
129 |
agtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtgagcagagcctca |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37225197 |
agtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtgagcagagcctca |
37225128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 22654437 - 22654337
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccg-gcttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
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|||||||||| |||||||||||||| ||||| | |||||||| ||||||||||| ||||||||||| ||| ||| |||||| ||||||||| |||| |
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| T |
22654437 |
tgatggttcagaggctaggctcaccaagcttaatggactagaaccgcagcagcttgttatccctccactatcaagagccagaggtattcgctgctatgtg |
22654338 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
22654337 |
a |
22654337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 37328109 - 37328158
Alignment:
| Q |
135 |
gcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctg |
184 |
Q |
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| T |
37328109 |
gcagcttgttatccctccactgtcaagagccagaggtcttcgctgctctg |
37328158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0754 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 4024 - 3924
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
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| T |
4024 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
3925 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
3924 |
a |
3924 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: scaffold0563
Description:
Target: scaffold0563; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 874 - 774
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
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| T |
874 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
775 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
774 |
a |
774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 10556 - 10456
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
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| T |
10556 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
10457 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
10456 |
a |
10456 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 3243 - 3343
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| ||| || |||||||||||||| |
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|
| T |
3243 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaagtattcgctgctctgtg |
3342 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
3343 |
a |
3343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 5071 - 5171
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| ||| || |||||||||||||| |
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| T |
5071 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaagtattcgctgctctgtg |
5170 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
5171 |
a |
5171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 7691 - 7591
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| ||| || |||||||||||||| |
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|
| T |
7691 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaagtattcgctgctctgtg |
7592 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
7591 |
a |
7591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 916 - 816
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
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|
| T |
916 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
817 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
816 |
a |
816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 15829899 - 15829999
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
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|
| T |
15829899 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
15829998 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
15829999 |
a |
15829999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 15831627 - 15831727
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
15831627 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
15831726 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
15831727 |
a |
15831727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 15833354 - 15833454
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
15833354 |
tgatggttcaaaggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtg |
15833453 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
15833454 |
a |
15833454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 15800315 - 15800415
Alignment:
| Q |
88 |
tgatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtg |
186 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| | |||| |||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
15800315 |
tgatggttcagaggctaggctcagcgggcttaatggactgaaagtgcagcagcccgtaatccctccactgtcaggagccagaggtattcgctgctctgtg |
15800414 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
15800415 |
a |
15800415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 15828277 - 15828373
Alignment:
| Q |
92 |
ggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggagggagaggtcttcgctgctctgtga |
187 |
Q |
| |
|
|||||| |||||||||||||||| |||| | ||| |||| ||||||| ||||||| ||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
15828277 |
ggttcagaggctaggctcaccgggcttaatggacagaaagtgcagcagcctgtaatcactccactgtcaggagctagaggtattcgctgctttgtga |
15828373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 15820788 - 15820863
Alignment:
| Q |
89 |
gatggttcaaaggctaggctcaccgg-cttagtagactagaagtacagcagcttgtaatccctccactgtcaggag |
163 |
Q |
| |
|
||||||||||||||||||||||| || |||| | |||| |||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
15820788 |
gatggttcaaaggctaggctcactgggcttaatggactgaaagtgctgcagcctgtaatccctccactgtcaggag |
15820863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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