View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_4 (Length: 603)
Name: NF20946_low_4
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 20 - 586
Target Start/End: Complemental strand, 1720898 - 1720332
Alignment:
| Q |
20 |
tgcaggtacatgctgctgctttgaaaatgtcgttggatttcagtgtatatgttgcaaatgctcttattacgatgtatagcaagtgttctggtggtttcgg |
119 |
Q |
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| T |
1720898 |
tgcaggtacatgctgctgctttgaaaatgtcgttggatttcagtgtatatgttgcaaatgctcttattacgatgtatagcaagtgttctggtggtttcgg |
1720799 |
T |
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| Q |
120 |
tggaagttgtgatcaaaccacagatgatgcgtggatggtgttcaagtcaatggagtacagaaatcttatatcttggaattcgatgatttcaggttttcaa |
219 |
Q |
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| T |
1720798 |
tggaagttgtgatcaaaccacggatgatgcgtggatggtgttcaagtcgatggagtacagaaatcttatatcttggaattcgatgatttcaggttttcaa |
1720699 |
T |
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| Q |
220 |
ttccgtggacttggcgacaaagctattggtctgtttgcgcatatgtattgcaatggaattgggtttaacagtaccacgttactcggtgttttatcttctt |
319 |
Q |
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| T |
1720698 |
ttccgtggacttggcgacaaagctattggtctgtttgcgcatatgtattgcaatggaattaggtttaacagtaccacgttactcggtgttttatcttctt |
1720599 |
T |
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| Q |
320 |
tgaatcattgcatgagtacttcggatgacatcaacaacacacatcatctgaagaactgttttcaattacactgtctcacagttaaaagtggtcttatttc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1720598 |
tgaatcattgcatgagtacttcggatgacatcaacaacacacatcatctgaagaactgttttcaattacactgtctcacagttaaaagtggtcttatttc |
1720499 |
T |
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| Q |
420 |
agaagttgaagtggtaactgcattggtaaaatcctatgcagacctagggggtcacatttctgactgttttaagctcttccttgatacaagcggagaacat |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1720498 |
agaagttgaagtggtaactgcattggtaaaatcctatgcagacctagggggtcacatttctgactgttttaagctcttccttgatacaagcggtgaacat |
1720399 |
T |
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| Q |
520 |
gatattgtgtcatggactgctattatttctgtgtttgcggagcgcgatcctgagcaagcattccttc |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
1720398 |
gatattgtgtcatggactgctattatttctgtgtttgcagagcgcgatcctgagcaagctttccttc |
1720332 |
T |
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