View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_5 (Length: 601)
Name: NF20946_low_5
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 15 - 591
Target Start/End: Complemental strand, 45344734 - 45344158
Alignment:
| Q |
15 |
tcaatcttcattgacatcttaaagctttcaaacatgcatgcatcattcccagtaaagattaaatcatcaacatacaaactcacaattaaaattcttttac |
114 |
Q |
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| T |
45344734 |
tcaatcttcattgacatcttaaagctttcaaacatgcatgcatcattcccagtaaagattaaatcatcaacatacaaactcacaattaaaattcttttac |
45344635 |
T |
|
| Q |
115 |
ctcctgttttgacaaagagagtatgatcatgattgcatctttcaaatcattccttagcaaaatatgattcaattttactatatcaagctcgcggtgcttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45344634 |
ctcctgttttgacaaagagagtatgatcatgattgcatctttcaaatcattccttagcaaaatatgattcaattttactatatcaagctcgtggtgcttg |
45344535 |
T |
|
| Q |
215 |
ctttaacccatataaagctttcttaagcttgtagaccttttctttttcaccccttcggacataccctaatggatgttctacatacacgtcctctattaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344534 |
ctttaacccatataaagctttcttaagcttgtagaccttttctttttcaccccttcggacataccctaatggatgttctacatacacgtcctctattaac |
45344435 |
T |
|
| Q |
315 |
ttactatgaagaaatgcgcttttgacatcgagctggtacacactccaccccttttgtgctgctaaagctaaaaccatccggattgtgtcccaccttgcta |
414 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344434 |
ttactatgaagaaatgcgcttttgacatcgagttggtacacactccaccccttttgtgctgctaaagctaaaaccatccggattgtgtcccaccttgcta |
45344335 |
T |
|
| Q |
415 |
ccggagcaaagacttcgtcataatcaacccttgttgctgagcatagcctttagctaccaaccgggctttgaacttatcaacctcgccattctcatttaat |
514 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344334 |
ccggagcaaagacttcgttataatcaacccttgttgctgagcatagcctttagctaccaaccgggctttgaacttatcaacctcgccattctcatttaat |
45344235 |
T |
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| Q |
515 |
ttggttctaaagacccatttcacaccaatcttcttagcaccttcaggtaaatttgtaagctgccaagttttattctt |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344234 |
ttggttctaaagacccatttcacaccaatcttcttagcaccttcaggtaaatttgtaagctgccaagttttattctt |
45344158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 10781926 - 10781979
Alignment:
| Q |
182 |
ttcaattttactatatcaagctcgcggtgcttgctttaacccatataaagcttt |
235 |
Q |
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||||||||||||||| ||||||| || ||||||||||| |||||||||||||| |
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| T |
10781926 |
ttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttt |
10781979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 1154906 - 1154953
Alignment:
| Q |
55 |
catcattcccagtaaagattaaatcatcaacatacaaactcacaatta |
102 |
Q |
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||||||| |||||||| || |||||||||||||||||||| ||||||| |
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| T |
1154906 |
catcattgccagtaaatatcaaatcatcaacatacaaacttacaatta |
1154953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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