View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_8 (Length: 546)
Name: NF20946_low_8
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Complemental strand, 6370967 - 6370437
Alignment:
| Q |
9 |
gagatgaattacttaacacagatgagagtttaatattcagtcaagagtttaacacctttcaagatgtgttgtcactcttcaatattcaaattaaccatgg |
108 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6370967 |
gagatgaattacttcacacagatgagagtttaatattcagtcaagagtttaacacctttcaagatgtgttgtcactcttcaatattcaaattaaccatgg |
6370868 |
T |
|
| Q |
109 |
tcctgatatactaagtaaattcaacaaaacatcgaggtccaacgaactttccccaattaatgctaaatcagtggctaaaagttcaacgtatccaacacca |
208 |
Q |
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| T |
6370867 |
tactgatatactaagtaaattcaacaaaacatcgaggtccaacgaactttccccaattaatgctaaatcagtggctaaaagttcaacgtatccaacacca |
6370768 |
T |
|
| Q |
209 |
caagtaattgcaggnnnnnnnnnnnnn--tggccagaaattccaagttatcgcaatatat--ttaactatatacaaaatcatataaagaaagctcatgga |
304 |
Q |
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| T |
6370767 |
caagtgattgcaggtatatatatatatattgttcagaaattccaagttatcgcaatatatatttaactatatacaaaatcatataaagaaagctcatgga |
6370668 |
T |
|
| Q |
305 |
ttcttttgaaaatttgttactatgagtagaggattatcatgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatccgaatgcc |
404 |
Q |
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| T |
6370667 |
ttcttttgaaaatttgttactatgagtagaggattatcatgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatccgaatgcc |
6370568 |
T |
|
| Q |
405 |
atcgaaaaacttctggtaaatttgtaatatttttaagcatgtacaaaagaaataaagaaggttatcatttcaacttttcatatataatacatacatagta |
504 |
Q |
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| T |
6370567 |
atcgaaaaacttctggtaaatttgtaatatttttaagcatgtacaaaagaaataaagaaggttatcatttcaacttttcatatataatacatacatagta |
6370468 |
T |
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| Q |
505 |
atttgtaattaacctcattgctttctatatt |
535 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6370467 |
atttgtaattaacctcattgctttctatatt |
6370437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 259 - 397
Target Start/End: Complemental strand, 6391622 - 6391485
Alignment:
| Q |
259 |
caatatatttaactatatacaaaatcatataaagaaagctcatggattcttttgaaaatttgttactatgagtagaggattatcatgcatggatggctga |
358 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
6391622 |
caatatatttaattatatacacaatcatataaagaaagctcatgaat-cttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactga |
6391524 |
T |
|
| Q |
359 |
tgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
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| T |
6391523 |
tgaggaatttgcaagggagatgattgctggtgtgaatcc |
6391485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 259 - 397
Target Start/End: Complemental strand, 6410784 - 6410647
Alignment:
| Q |
259 |
caatatatttaactatatacaaaatcatataaagaaagctcatggattcttttgaaaatttgttactatgagtagaggattatcatgcatggatggctga |
358 |
Q |
| |
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| T |
6410784 |
caatatatttaattatatacacaatcatataaaaaaagctcatggat-cttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactga |
6410686 |
T |
|
| Q |
359 |
tgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
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||||||||| |||||| |||| ||||||||||||||||| |
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| T |
6410685 |
tgaggaattcgcaagagagataattgctggtgtgaatcc |
6410647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 6352993 - 6352874
Alignment:
| Q |
274 |
tatacaaaatcatataaagaaagctcatggattcttttgaaaatttgttactatgagtagaggattatcatgcatggatggctgatgaggaatttgcaag |
373 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||||||||||||| ||| ||||| || ||| || ||||||| | ||||||||||||||||||| |
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| T |
6352993 |
tatacaaaatcatataaagaaatctaatggat-cttttgaaaatttcttaatatgaacagtggaccattctgcatggcagactgatgaggaatttgcaag |
6352895 |
T |
|
| Q |
374 |
acagatgattgctggtgtgaa |
394 |
Q |
| |
|
||||||||||||| ||||| |
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| T |
6352894 |
ggagatgattgctggggtgaa |
6352874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 7459713 - 7459633
Alignment:
| Q |
344 |
tgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatccgaatgccatcgaaaaacttctggtaaa |
424 |
Q |
| |
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|||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| || |||| |||||||||||||||| |
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| T |
7459713 |
tgcatggatgactgatgaggaattcgcaaggcagatgattgctggggtgaatcctcatatcatcaaaaaacttctggtaaa |
7459633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 6363729 - 6363676
Alignment:
| Q |
344 |
tgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
6363729 |
tgcatggatgactgatgaggaatttgcaagggagatgattgctggggtgaatcc |
6363676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 6289578 - 6289528
Alignment:
| Q |
347 |
atggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
|
||||||| ||||||| |||||| ||||| |||||||||||||||||||||| |
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| T |
6289578 |
atggatgactgatgaagaatttacaagagagatgattgctggtgtgaatcc |
6289528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 6321959 - 6321910
Alignment:
| Q |
348 |
tggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
6321959 |
tggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatcc |
6321910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 6332537 - 6332484
Alignment:
| Q |
344 |
tgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
6332537 |
tgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatcc |
6332484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 6424616 - 6424567
Alignment:
| Q |
348 |
tggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
6424616 |
tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcc |
6424567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 36744663 - 36744716
Alignment:
| Q |
344 |
tgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
397 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | ||| |||||||||| ||||| |
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|
| T |
36744663 |
tgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc |
36744716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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