View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20946_low_9 (Length: 543)
Name: NF20946_low_9
Description: NF20946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20946_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 89 - 527
Target Start/End: Original strand, 5418446 - 5418884
Alignment:
| Q |
89 |
tagtcgagacacaagtgaccgtttgattttaatgtaatttaaaattatagagtttgaatctgaatcgtccaatcttaatcaaatcaccactaaagttcta |
188 |
Q |
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| T |
5418446 |
tagtcgagacacaagtgaccgtttgattttaatgtaatttaaaaatatagagtttgaatgtgaatcgtccaatcttaatcaaataaccactaaaattcta |
5418545 |
T |
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| Q |
189 |
gagtacgtgaatgcgcagaatccttaaaattaaagatgagcatgatccaattccctttagttataccttcccatcttttcacctacccattttgtactat |
288 |
Q |
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| T |
5418546 |
gagtacgtgaatacgcggaatccttaaaattaaaggtgagcatgatccaattccctttagttataccttcccatcttttcacctacccattttctactat |
5418645 |
T |
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| Q |
289 |
aaataatgtcactcacacaattcaaccacataagcctcaaacttccttagtgagtttcccttcctctgctctagtgagtgccactttagttaactttcat |
388 |
Q |
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| T |
5418646 |
aaataatctcactcacacaattcaaccacataagcctcaaacttccttagtgagttttccttcctctgctctagtgagtgccactttagttaactttcat |
5418745 |
T |
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| Q |
389 |
atagttcatctaaatattttctcaatattctacactttgacagcaagatgaagccagcatttgcagctatgttacttgtgtgtcttatccttagctcatt |
488 |
Q |
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| T |
5418746 |
atagttcatctaaatcttttctcaatattctacactttgacagcaagatgaagccagcatttgcagctatgttacttgtgtgtcttatccttagctcatt |
5418845 |
T |
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| Q |
489 |
tatgttcgaaatgtccattgctggcactggtatgttata |
527 |
Q |
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| T |
5418846 |
tatgttcgaaatgtccattgctggcactggtatgttata |
5418884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5418363 - 5418274
Alignment:
| Q |
1 |
aaatgtagtgacagctaaaaattgcaagcaaagagacagctggatagtgggtttggtagtgtggtattatgtgcggaagccgcgtacgta |
90 |
Q |
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| T |
5418363 |
aaatgtattgacatctcaaaattgcaagcaaagagacagctggatagtgggtttggtagtgtggtattatgtgcggaagccgcgtacgta |
5418274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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