View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20947_high_4 (Length: 308)
Name: NF20947_high_4
Description: NF20947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20947_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 20429223 - 20428956
Alignment:
| Q |
12 |
atgaaatgacagtgaaaaaaggagccttgacatcaggacaagcacataagtgttatgatatatgaggtttgaaatccaaaactattataaacttataatg |
111 |
Q |
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| T |
20429223 |
atgaaatgacagtgaaaaaaggagccttgacatcaggacaagcacatatgtgttatgatatatgaggtttgaaagccaaaactattataaacttataatg |
20429124 |
T |
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| Q |
112 |
tttggtcacttgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagca |
211 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20429123 |
tttgctcacatgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagca |
20429024 |
T |
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| Q |
212 |
ttaaaatacataccatgttctggcataaaggagctctaggagccagcggatcaaggcgaggcactccc |
279 |
Q |
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| T |
20429023 |
ttaaaatacataccatgttctggcataaaggagctctaggagccagcggatcaagacgaggcactccc |
20428956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 44439422 - 44439290
Alignment:
| Q |
148 |
aaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagcattaaaatacataccatgttctggcataaaggagctc |
247 |
Q |
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||||||||||||| ||| | ||||| |||||||||| ||| ||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
44439422 |
aaaattactgcaatttttataaaattataacacttagaataacaataagcaaacaagagtagtattaaaatacataccgtgttctggcctaaaggagctc |
44439323 |
T |
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| Q |
248 |
taggagccagcggatc-aaggcgaggcactccc |
279 |
Q |
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|| |||||||| |||| |||| ||||||||||| |
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| T |
44439322 |
taagagccagctgatcaaaggtgaggcactccc |
44439290 |
T |
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