View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_high_16 (Length: 242)
Name: NF20948_high_16
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 5546248 - 5546471
Alignment:
| Q |
2 |
tctcataattgcaagtatatatgattctatagaagaaaaaagaatgggagaataatggtgtatgtttgtggagaatgtaatatgaagttatatatataga |
101 |
Q |
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| T |
5546248 |
tctcataattgcaagtatatatgattctatagaagaaaaaagaatgggagaataatggtgtatgtttgtggagaatgtaatatgaagttatatatataga |
5546347 |
T |
|
| Q |
102 |
tggaaggtgttgctattatgtagttgtaacttgtatgagtgaagaaatagtaatattgaagatgattgtgcagtgtgctataagcaatgctacgaagaaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5546348 |
tggaaggtgttgctattatgtagttgtaacttgtatgagtgaagaaatagtaatattgaagatgattgtgcagtgtgctataagcaatgctacgaagaaa |
5546447 |
T |
|
| Q |
202 |
tcggaataggtaggagacagaaat |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
5546448 |
tcggaataggtaggagacagaaat |
5546471 |
T |
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