View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20948_high_2 (Length: 512)
Name: NF20948_high_2
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Original strand, 28351094 - 28351574
Alignment:
| Q |
18 |
ttatatgatactaatgtttaggctataaatgtttaattaagttgtttatccaatcaaggccttattgaaataatttaaaaatggattatatacaaatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
28351094 |
ttatatgatactaatgtttaggctataaatgtttaattaagttgtttatccaatcaaggccttattgaaataagttaaaaatcgattatatacaaatcat |
28351193 |
T |
|
| Q |
118 |
aaattatttgtataagcgctctcaaacatttacagagctttactagtatattagtccaaaaaagttattcaaaactcaatccaactacaccctaattcaa |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28351194 |
aaattatttgtataagctctctcaaacatttagagagctttactagtatattagtccaaaaaagttattcaaaactcaatccaactacaccctaattcaa |
28351293 |
T |
|
| Q |
218 |
aactttattggagttgaaaaattaaaaatttaattattaatttttcaatcaaccttataaattacattgcttatttcaaaaggaataaattatagtttaa |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28351294 |
aactttattggagttgcaaaattaaaaatttaattattaatttttcaatcaaccttataaattacattgcttatttcaaaaggaataaattatagtttaa |
28351393 |
T |
|
| Q |
318 |
ctagttataacattaatcttttctactcaattcaatataaacctgcaccttatgctttcagggtcaaagcatttcattacagaaaacccacatatccaca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28351394 |
ctagttataacattaatcttttctactcaattcaatataaacctgcaccttatgctttcagggtcaaagcatttcattacagaaaacccacatatccaca |
28351493 |
T |
|
| Q |
418 |
gatttggatcccaacagaaaccttaaatttcaagaagcattttcattggcaaaagagagtaaagaagaagtggattcatct |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
28351494 |
catttggatcccaacagaaaccttaaatttcaagaagcattttcattggcaaaagaaagtaacgaagaagtggattcatct |
28351574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 38149389 - 38149441
Alignment:
| Q |
32 |
tgtttaggctataaatgtttaattaagttgtttatccaatcaaggccttattg |
84 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||||||||| || |||| ||||| |
|
|
| T |
38149389 |
tgtttatgctataactatttaattaagttgtttatccaaacagggccatattg |
38149441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 7026665 - 7026615
Alignment:
| Q |
18 |
ttatatgatactaatgtttaggctataaatgtttaattaagttgtttatccaa |
70 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
7026665 |
ttatatgata--aatgtttatgctgtaaatgcttaattaagttgtttatccaa |
7026615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 40294429 - 40294400
Alignment:
| Q |
39 |
gctataaatgtttaattaagttgtttatcc |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40294429 |
gctataaatgtttaattaagttgtttatcc |
40294400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 22759120 - 22759068
Alignment:
| Q |
18 |
ttatatgatactaatgtttaggctataaatgtttaattaagttgtttatccaa |
70 |
Q |
| |
|
|||||||||| |||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
22759120 |
ttatatgataaaaatgtttatactataagtgcttaattaagttgtttatccaa |
22759068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 26030901 - 26030865
Alignment:
| Q |
39 |
gctataaatgtttaattaagttgtttatccaatcaag |
75 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
26030901 |
gctataaatgtttaattaagttggttatccaagcaag |
26030865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 4430188 - 4430224
Alignment:
| Q |
39 |
gctataaatgtttaattaagttgtttatccaatcaag |
75 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
4430188 |
gctataaatgtttaactaagttgtttatccaaacaag |
4430224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University