View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_high_5 (Length: 463)
Name: NF20948_high_5
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 47630286 - 47630717
Alignment:
| Q |
18 |
ataacttcacagtcaaattatgttttctacaaccaaacccactccctattttatttatccattgcactcttctttgtttttcatattactaattaaagat |
117 |
Q |
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| T |
47630286 |
ataacttcacagtcaaattatgttttctacaaccaaacccactccctattttatttatctattgcactgttctttgttttttatattactaattaaagat |
47630385 |
T |
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| Q |
118 |
gcttgtgaaaatcaaggatcgtcaatctaagtccaaagttagagagtgttaagcttccttactgttcatttatttataattagaattgaaaagtgnnnnn |
217 |
Q |
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| T |
47630386 |
gcttgtgaaaatcaaggatcgtcaatctaagtccaaagttagagagtgttaagcttccttactgttcatttatttataattagaattgaaaagtgttttt |
47630485 |
T |
|
| Q |
218 |
nncctcaacacttaaaaggtcacatgcatgtattacattcaagtcacggttagtatgatttcaaagttcaccc-nnnnnnnaatttaatagttggtacat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47630486 |
ttcctcaacacttaaaaggtcacatgcatgtattacattcaagtcacggttagtatgatttcaaagttcacccttttttttaatttaatagttggtacat |
47630585 |
T |
|
| Q |
317 |
ctttagatacgaaaccagattgnnnnnnntactgaacaaattctcttgctaatccttttgaagaagatattttatcgaacaagtgagaattaacatcttt |
416 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47630586 |
ctttagatacgacaccagattgaaaaaaatactgaacaaattctcttgctaatccttttgaggaagatattttatcgaacaagtgagaattaacatcttt |
47630685 |
T |
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| Q |
417 |
ataatttgcagtatccacctcaatagtctctg |
448 |
Q |
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| T |
47630686 |
ataatttgcagtatccacctcaatagtctctg |
47630717 |
T |
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