View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_11 (Length: 249)
Name: NF20948_low_11
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43030654 - 43030906
Alignment:
| Q |
1 |
tgttgtggaagagaaagggtgtttggttcttggatggaaatcaaagcctattgttgcagtttcttgctggaaatgctgaatgacctctttt-agttctgt |
99 |
Q |
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| T |
43030654 |
tgttgtggaagagaaagggtgtttggttcttggatggaaatcaaagcctattgttgcagtttcttgctggaaatgctgaatgacctctttttagttctgt |
43030753 |
T |
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| Q |
100 |
caataa-------------gagaagctgttaagtgtgtttgaataatttgttattgtgtgcatgttgtgaatttaagaccctatattagtagcttgtgaa |
186 |
Q |
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|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030754 |
caataaataacagttctgtgagaagctgttatatgtgtttgaataatttgtttttgtgtgcatgttgtgaatttaagaccctatattagtagcttgtgaa |
43030853 |
T |
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| Q |
187 |
agtactgaaatatttagggcgagaataaaacttttgatgtaattctgtctgtg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43030854 |
agtactgaaatatttagggcgagaataaaacttttgatgtaattctgtgtgtg |
43030906 |
T |
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