View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_13 (Length: 245)
Name: NF20948_low_13
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 32877096 - 32877302
Alignment:
| Q |
16 |
caaaggcggaaagtatatactgttttctatatactcgaatataatatcnnnnnnnaaacaactgatcgtatataatatcttgatttttattttgaattat |
115 |
Q |
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| T |
32877096 |
caaaggcggaaagtatatactgttttctatatactcgaatata-tatctttttttaaacaactgatcgtatataatatcttgatttttttttttga--at |
32877192 |
T |
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| Q |
116 |
aggtaatatcttgatatatagttgtacctttttatgtttcttcatatatggtagttgatataagacagaacacgacaatttatttcttggtccggtaatg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32877193 |
aggtaatatcttgatatatagttgtacctttttatgtttcttcatatatggtagttgatataagacagaacacgacaatatatttcttggtccggtaatg |
32877292 |
T |
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| Q |
216 |
ttcaagatat |
225 |
Q |
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|||||||||| |
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| T |
32877293 |
ttcaagatat |
32877302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 32888128 - 32888282
Alignment:
| Q |
71 |
aaacaactgatcgtatataatatcttgatttttattttgaatta-taggtaatatcttgatatatagttgtacctttttatgtttcttcatatatggtag |
169 |
Q |
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||||||||||||||||||||||||||| ||||| |||| | | || ||||| |||||||||||||| || | |||||||||| ||||||||||||||| |
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| T |
32888128 |
aaacaactgatcgtatataatatcttgtttttttttttttttgaataagtaatttcttgatatatagtagttcttttttatgtt-cttcatatatggtag |
32888226 |
T |
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| Q |
170 |
ttgatataagacagaacacgacaatttatttcttggtccggtaatgttcaagatat |
225 |
Q |
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| T |
32888227 |
ttgatataagacagaacacgacaatttatttcttggtccggtaatgttcaagatat |
32888282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 32883066 - 32883147
Alignment:
| Q |
144 |
tttttatgtttcttcatatatggtagttgatataagacagaacacgacaattta-tttcttggtccggtaatgttcaagatat |
225 |
Q |
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| T |
32883066 |
tttttatgtt-cttcatatatggtagttgatataagacagaacacgacaatttattttcttggtccggtaatgttcaagatat |
32883147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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