View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_15 (Length: 243)
Name: NF20948_low_15
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48485290 - 48485516
Alignment:
| Q |
1 |
ctaatcttcaaattacatttcacagtttctatttcatgaaatatttcaccaacagatgtattttcatatgttaccttgtacactacaccaaatccaccct |
100 |
Q |
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| T |
48485290 |
ctaatcttcaatttacatttcacagtttctatttcatgaaatatttcaccaacagatgtattttcatatgttaccttgtacactacaccaaatccaccct |
48485389 |
T |
|
| Q |
101 |
ctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatcagaaccatttccattgagatcttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48485390 |
ctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatcagaaccatttccattgagatcttcttc |
48485489 |
T |
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| Q |
201 |
agctgctgataaatatatcctcatttt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48485490 |
agctgctgataaatatatcctcatttt |
48485516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48477545 - 48477766
Alignment:
| Q |
1 |
ctaatcttcaaattacatttcacagtttctattt-catgaaatatttcaccaacagatgtattttcatatgttaccttgtacactacaccaaatccaccc |
99 |
Q |
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| T |
48477545 |
ctaatcttcaattttcatatcacagtttttatttgcatgaaatatttcacaaacaggagt--ttccaaatgttaccttgtacactgcaccaaatccaccc |
48477642 |
T |
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| Q |
100 |
tctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatcagaaccatttccattgagatcttctt |
199 |
Q |
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| T |
48477643 |
tctccaaccttattttctgttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatcagaaccattttcattgagatcttcgt |
48477742 |
T |
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| Q |
200 |
cagctgctgataaatatatcctca |
223 |
Q |
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||| ||||||||||| |||||||| |
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| T |
48477743 |
caggtgctgataaatgtatcctca |
48477766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48469221 - 48469442
Alignment:
| Q |
1 |
ctaatcttcaaattacatttcacagtttctattt-catgaaatatttcaccaacagatgtattttcatatgttaccttgtacactacaccaaatccaccc |
99 |
Q |
| |
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||||||||||| ||||||||||| |||| |||| |||||||| ||||| |||| || |||| || ||| ||||||||||||| |||||||||||||| |
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| T |
48469221 |
ctaatcttcaatttacatttcaccgttttcatttgcatgaaatttttcagaaaca--tgaatttccaaatgataccttgtacactgcaccaaatccaccc |
48469318 |
T |
|
| Q |
100 |
tctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatcagaaccatttccattgagatcttctt |
199 |
Q |
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||||||| |||||||||||||||||||| | |||||| | ||| ||||||||||||| ||||||||| ||||||||||||||| |||||||| |||| | |
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| T |
48469319 |
tctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatcagaaccattttcattgagaccttcgt |
48469418 |
T |
|
| Q |
200 |
cagctgctgataaatatatcctca |
223 |
Q |
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||| ||||||||||| |||||||| |
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| T |
48469419 |
caggtgctgataaatgtatcctca |
48469442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 48884548 - 48884397
Alignment:
| Q |
68 |
atgttaccttgtacactacaccaaatccaccctctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactat |
167 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | || |||| ||||| ||||||||||||| ||||||||| |
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| T |
48884548 |
atgttaccttgtacactgcaccaaatccaccctctccggccttattttcttttgagaagtaacctcttgctacttttattgtgagataatcaaatactat |
48884449 |
T |
|
| Q |
168 |
taaatcagaaccatttccattgagatcttcttcagctgctgataaatatatcctca |
223 |
Q |
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| T |
48884448 |
caaatcagaaccatttcc----agatcttcttcaggtgctgataaatgtatcctca |
48884397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 38818063 - 38817843
Alignment:
| Q |
2 |
taatcttcaaattacatttcacagtttctattt--catgaaatatttcaccaacagatgtattttcatatgttaccttgtacactacaccaaatccaccc |
99 |
Q |
| |
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||||||| || |||||||||||||||||||||| |||||||||||||| |||| || |||| || ||||||||||||||||| |||||||||||||| |
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| T |
38818063 |
taatcttgaatttacatttcacagtttctatttagcatgaaatatttcagaaacacgtgaatttccaaatgttaccttgtacactgcaccaaatccaccc |
38817964 |
T |
|
| Q |
100 |
tctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatcagaaccatttccattgagatcttctt |
199 |
Q |
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||||||| |||||||||||||||||||| | |||||| | ||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| | |
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| T |
38817963 |
tctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatcagaaccattttcattgagatcttcgt |
38817864 |
T |
|
| Q |
200 |
cagctgctgataaatatatcc |
220 |
Q |
| |
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||| ||||||||||| ||||| |
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| T |
38817863 |
caggtgctgataaatgtatcc |
38817843 |
T |
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