View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20948_low_18 (Length: 239)

Name: NF20948_low_18
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20948_low_18
NF20948_low_18
[»] chr2 (8 HSPs)
chr2 (19-239)||(17650653-17650873)
chr2 (43-239)||(17698711-17698907)
chr2 (43-239)||(17711923-17712119)
chr2 (19-239)||(17641989-17642209)
chr2 (43-239)||(17660882-17661078)
chr2 (39-239)||(17617057-17617257)
chr2 (19-91)||(17722383-17722455)
chr2 (19-91)||(17707986-17708058)
[»] chr3 (5 HSPs)
chr3 (48-216)||(5924773-5924941)
chr3 (48-204)||(5978091-5978247)
chr3 (48-204)||(5984064-5984220)
chr3 (20-204)||(5918460-5918644)
chr3 (68-204)||(5906240-5906376)
[»] chr4 (1 HSPs)
chr4 (37-222)||(4208622-4208807)
[»] chr8 (1 HSPs)
chr8 (71-219)||(31903836-31903984)
[»] chr6 (2 HSPs)
chr6 (59-117)||(29467800-29467858)
chr6 (98-135)||(29761207-29761244)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 17650653 - 17650873
Alignment:
Q  19 tttcaccggtagccttttcaattctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcactt 118  Q
    |||||| |||||||| | ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17650653 tttcactggtagcctctacaattctcttgatcaaaaaggtattcacactttcattgatgaaaaagaaattcaaaagggagaagaaatcacaccatcactt 17650752  T
Q  119 cttcaagcaattcaacaatctaggatctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgact 218  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17650753 cttcaagctattcaacaatctagaatctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgagt 17650852  T
Q  219 gttccaacacacatagacgct 239  Q
    |||||||||||| ||||||||    
T  17650853 gttccaacacacgtagacgct 17650873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 17698711 - 17698907
Alignment:
Q  43 tcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctagg 142  Q
    |||||||||||| |||||||| || ||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||     
T  17698711 tcttgatcaaaacggtattcacactttctttgatgaacaagaaattcaaaaaggagaagagatcacaccatcacttcttcaagctattcaacaatctaga 17698810  T
Q  143 atctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgactgttccaacacacatagacgct 239  Q
    || | ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17698811 attttcattgttgttttctctaacaactatgcttcctctactttttgcttgaatgaacttgtcatgatccttgactgttccaacacacatagacgct 17698907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 17711923 - 17712119
Alignment:
Q  43 tcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctagg 142  Q
    |||||||||||| |||||||| || ||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  17711923 tcttgatcaaaacggtattcacactttctttgatgaacaagaaattcaaaaaggagaagagatcacaccatcacttcttcaagctattcaacaatctagg 17712022  T
Q  143 atctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgactgttccaacacacatagacgct 239  Q
    || | ||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17712023 attttcattgttgttttctctaacaactatgcttcctctactttttgtttgaatgaacttgtcatgatccttgagtgttccaacacacatggacgct 17712119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 17641989 - 17642209
Alignment:
Q  19 tttcaccggtagccttttcaattctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcactt 118  Q
    |||||| |||| ||| | |||||||||||||||||| |||||||| || ||| |||||||||||||||||||||| |||||| |||| |||| | |||||    
T  17641989 tttcactggtaacctctacaattctcttgatcaaaagggtattcacactttccttgatgaagaagaaattcaaaaaggagaacaaataacacgagcactt 17642088  T
Q  119 cttcaagcaattcaacaatctaggatctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgact 218  Q
     ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||| |    
T  17642089 tttcaagcaattcaacaatctaggattttcattgttgttttctctaacaactatgcttcctcaactttttgtttgaatgaacttgccgtgatccttgagt 17642188  T
Q  219 gttccaacacacatagacgct 239  Q
    |||||||||||||| ||||||    
T  17642189 gttccaacacacatggacgct 17642209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 17660882 - 17661078
Alignment:
Q  43 tcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctagg 142  Q
    |||| ||||||| |||||||| || ||| ||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  17660882 tctttatcaaaacggtattcacactttctttgatgaagaacaaattcaaaagggagaagagatcacaccagcactttttcaagcaattcaacaatctagg 17660981  T
Q  143 atctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgactgttccaacacacatagacgct 239  Q
    || | ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  17660982 attttcattgttgttttctctaacaactatgcttcctcaactttttgtttgaatgaacttgttgtgatccttgactgttccaacacacatggacgct 17661078  T

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Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 17617057 - 17617257
Alignment:
Q  39 attctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatc 138  Q
    ||||||| |||||||| |||||||| || ||| |||||||| || |||||||||| |||||| |||| |||||| | ||| |||||||||||||||||||    
T  17617057 attctctagatcaaaacggtattcacactttctttgatgaaaaacaaattcaaaaaggagaacaaattacaccagccctttttcaagcaattcaacaatc 17617156  T
Q  139 taggatctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgactgttccaacacacatagacgc 238  Q
    |||||| | ||||||||||||||||| |||||||||||| || |||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  17617157 taggattttcattgttgttttctctaacaactatgcttcctctactttttgtttgaatgaacttgccttgatccttgactgttccaacacacatggacgc 17617256  T
Q  239 t 239  Q
    |    
T  17617257 t 17617257  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 17722383 - 17722455
Alignment:
Q  19 tttcaccggtagccttttcaattctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaa 91  Q
    ||||||||||| ||| | ||  |||||||||||||| |||||||| || |||||||||| |||||||||||||    
T  17722383 tttcaccggtaacctctacaggtctcttgatcaaaagggtattcacactttcattgatgtagaagaaattcaa 17722455  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 17707986 - 17708058
Alignment:
Q  19 tttcaccggtagccttttcaattctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaa 91  Q
    ||||||||||| ||| | ||  |||||||||||||| |||||||| || |||||||||| |||||| ||||||    
T  17707986 tttcaccggtaacctctacaggtctcttgatcaaaagggtattcacactttcattgatgtagaagatattcaa 17708058  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 216
Target Start/End: Complemental strand, 5924941 - 5924773
Alignment:
Q  48 atcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctaggatcta 147  Q
    |||||| |||||| || || || || ||||| |||||||||||||| |||||||||||||||||  | ||||||||||| ||| || |||||||||| |     
T  5924941 atcaaagaggtatacaaacttttatggatgatgaagaaattcaaaaaggagaagaaatcacacctactcttcttcaagccattgaagaatctaggatttt 5924842  T
Q  148 cattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttga 216  Q
    ||||| | |||||||    |||||||| || ||||| ||||| |||| |||||||||||  ||||||||    
T  5924841 cattgctattttctcacctaactatgcatcttcaacgttttgtttgactgaacttgtcaccatccttga 5924773  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 5978247 - 5978091
Alignment:
Q  48 atcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctaggatcta 147  Q
    |||||| |||||| || || || || ||||| |||||||||||||| |||||||||||||||||  | ||||||||||| ||| |||||||||| || |     
T  5978247 atcaaagaggtatacaaacttttatggatgatgaagaaattcaaaaaggagaagaaatcacacctactcttcttcaagccattaaacaatctagaatttt 5978148  T
Q  148 cattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgt 204  Q
    ||||| | |||||||    |||||||| || ||||| ||||| |||| |||||||||    
T  5978147 cattgctattttctcccctaactatgcatcttcaacgttttgtttgactgaacttgt 5978091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 5984220 - 5984064
Alignment:
Q  48 atcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctaggatcta 147  Q
    |||||| |||||| || || || || ||||| |||||||||||||| |||||||||||||||||  | ||||||||||| ||| |||||||||| || |     
T  5984220 atcaaagaggtatacaaacttttatggatgatgaagaaattcaaaaaggagaagaaatcacacctactcttcttcaagccattaaacaatctagaatttt 5984121  T
Q  148 cattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgt 204  Q
    ||||| | |||||||    |||||||| || ||||| ||||| |||| |||||||||    
T  5984120 cattgctattttctcccctaactatgcatcttcaacgttttgtttgactgaacttgt 5984064  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 5918644 - 5918460
Alignment:
Q  20 ttcaccggtagccttttcaattctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttc 119  Q
    ||||| |||| ||| | |||||||||  |||||| |||||| |  || ||| ||||||| |||||||| ||||| ||||||||||| |||||  | ||||    
T  5918644 ttcactggtaacctctacaattctctcaatcaaagaggtatacgaacattctttgatgatgaagaaatacaaaaaggagaagaaattacacctactcttc 5918545  T
Q  120 ttcaagcaattcaacaatctaggatctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgt 204  Q
    ||||||| ||  || |||| || || | |||||||||||| || |  |||||||| || |||||||| || |||| |||||||||    
T  5918544 ttcaagccatcaaagaatccagaattttcattgttgttttttccactaactatgcatcttcaactttctgtttgactgaacttgt 5918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 5906376 - 5906240
Alignment:
Q  68 ttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctaggatctacattgttgttttctctagca 167  Q
    |||||||| || |||||||| ||||| ||||||||||| |||||  | |||||| |||| ||| || |||||||||| | ||||| | |||| ||    |    
T  5906376 ttcattgacgatgaagaaatacaaaaaggagaagaaataacacccactcttcttaaagccattaaagaatctaggattttcattgctattttgtccccta 5906277  T
Q  168 actatgcttcatcaactttttgcttgaatgaacttgt 204  Q
    ||||||| || ||||||||||| |||| |||||||||    
T  5906276 actatgcatcttcaactttttgtttgactgaacttgt 5906240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 4208807 - 4208622
Alignment:
Q  37 caattctcttgatcaaaaaggtattcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaa 136  Q
    |||||||||  |||||| ||||||  | || ||| |||||||| ||||||||||||| ||||||||||| ||||   | ||||||||||| ||  || ||    
T  4208807 caattctctcaatcaaagaggtataaaaactttctttgatgaacaagaaattcaaaaaggagaagaaataacacatactcttcttcaagccatcaaataa 4208708  T
Q  137 tctaggatctacattgttgttttctctagcaactatgcttcatcaactttttgcttgaatgaacttgtcatgatccttgactgttc 222  Q
    |||||||| | ||||| |||||| || |  |||||||| || ||||||||||| |||| ||||||||| |  |||||||| |||||    
T  4208707 tctaggattttcattgctgttttttccactaactatgcatcttcaactttttgtttgactgaacttgttaccatccttgagtgttc 4208622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 31903836 - 31903984
Alignment:
Q  71 attgatgaagaagaaattcaaaagggagaagaaatcacaccatcacttcttcaagcaattcaacaatctaggatctacattgttgttttctctagcaact 170  Q
    ||||| || |||||| ||||||  ||| | |||||||||||||||||| |  | |||||| || | ||||||||   |||| ||||  ||||||  ||||    
T  31903836 attgacgatgaagaacttcaaagaggacatgaaatcacaccatcacttttagaggcaattgaagagtctaggattgccattattgtgctctctaaaaact 31903935  T
Q  171 atgcttcatcaactttttgcttgaatgaacttgtcatgatccttgactg 219  Q
    ||||||| ||  | ||||||||  |||||||||||| ||||||||||||    
T  31903936 atgcttcttcttcattttgcttacatgaacttgtcaagatccttgactg 31903984  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 29467800 - 29467858
Alignment:
Q  59 attcatacgttcattgatgaagaagaaattcaaaagggagaagaaatcacaccatcact 117  Q
    ||||| || ||||| ||||| |||||| ||||||| || ||||||||||||||||||||    
T  29467800 attcacaccttcatggatgatgaagaacttcaaaaaggcgaagaaatcacaccatcact 29467858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 29761244 - 29761207
Alignment:
Q  98 gaagaaatcacaccatcacttcttcaagcaattcaaca 135  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  29761244 gaagaaatcacaccatcacttcttaaagcaattgaaca 29761207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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