View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_19 (Length: 238)
Name: NF20948_low_19
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35231303 - 35231523
Alignment:
| Q |
1 |
ccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaatatctgatgattg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35231303 |
ccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctagaaaagttgttcaaaatccaaatatctgatgattg |
35231402 |
T |
|
| Q |
101 |
ttcacagtgtaaattaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagaggcgccactgttcctcca |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231403 |
ttcaaagtgtaaattaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagaggcgccactgttcctcca |
35231502 |
T |
|
| Q |
201 |
aagaaacaaaaatgaaaagat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
35231503 |
aagaaacaaaaatgaaaagat |
35231523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52919571 - 52919791
Alignment:
| Q |
1 |
ccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaatatctgatgattg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919571 |
ccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaatatctgatgattg |
52919670 |
T |
|
| Q |
101 |
ttcacagtgtaaattaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagaggcgccactgttcctcca |
200 |
Q |
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|||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919671 |
ttcaaagtgtatatcaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagaggcgccactgttcctcca |
52919770 |
T |
|
| Q |
201 |
aagaaacaaaaatgaaaagat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
52919771 |
aagaaacaaaaatgaaaagat |
52919791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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